CI01000051_01528013_01535266 (OPN7A)


Basic Information

Item Value
gene id CI01000051_01528013_01535266
gene name OPN7A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1527909 ~ 1535266 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_01528013_01535266.mRNA
GTGTTTGTTCACTATGTGGAAACAGTATGCTGCTGTATGTGTCCTACAAGAAGAAGCACCTGTTAAAACCAGCCGAGTTCTTCATTATTAACCTGGCCATCAGTGACCTGGGCATGACCCTCAGCCTCTACCCCCTCGCGGTCACCTCAAGCCTCGCCCACAGGTGGCTTTATGGAAGGACAGTCTGTGTAATCTATGCCTTCTGTGGTGTTTTGTTCGGGATCTGCTCTCTGACCACTCTCACTATACTCAGCACTGTTTGCTGCCTCAAAGTCTGCTATCCACTTCACGGTAATAGGTTCAGCTATGAGCACGGTCGTGTGTTAATAGCGTGTGCGTGGGCCTATGCTCTCGTGTTCGCTTGCTCCCCTCTTGCCCACTGGGGGCAGTATGGTCCGGAACCCTACGGCACGGCCTGCTGTATCGACTGGGCCTGGTCCAATCACAACTCAGTTGCCCGCTCCTACACCACAGTGCTCTTCATCGCCTGTTACCTGCTGCCGTGTGGCATCATCATTGTCTCCTACACACGCATACTGCTCACGGTCCGAGAGTCCCGCAGAGCGGTGGAGCAGCACGTCTCAGCGCAGACACGCATGGGGAACATCCAGGCCATTATAGTGAAGTTGAGTGTGGCGGTGTGTATAGGATTCTTCACTGCATGGAGTCCGTACGCACTGGTGTCTATGTGGGCGGCGTTCGGCCATTTTGAGGACATCTCGCCCCTGGCCTTTGCCATCCCCGCAGTTTTTGCCAAATCCTCCACTCTTTATAACCCTCTCATCTACCTCTTGCTCAAACCCAACTTCCGCCACCTCCTCTGCAAGGACATGCGCTCCCTGCGAGGGGTTTGCGTGCACCACTGCCTGTGCCAATGTTTTCCCCGCTGGAGCTACCGCCCATCGCTAGCCCTCAGTCTGCAGCCCCTGCGGCGAAGAGGCCAATCCATCTCAGATTCCATGGGGGGGCCCGTAGGTCATTGTCACTGCCCTTGCGAAAGGTGCAACGACCCATTTGAGCAGTTTAAGCACTTCCCACGCCGCTGTCCCGTCAACGTGAACACTGTGCAGTTGTCTCTGCAGGACAGCACCGAACCCGAATTGGAGCCGGAACGAGAACCTAGAGTGATAAAAGAACTCAAACCAAAGAGCCAAACAATGGAGTGTAAGAAGTCCGTGCGGGTGATTGTGAGGGGGCGGAGATGCTCCGAGATTGACAGTCTGGAGATCACCTTGGAAACGGTGCCTGCTCATGGCAAAGCTACCAAAAACGCCAAACCGTAACACCTGAGCCTGTGTGTGGGTGTGTGTTTATACTCGTGCGGTGAGTGTGTGTATTCACTTGTCTCAAAGGGGAGTAAATAGACTTTGACATATGCCTCAATTAA

Function

symbol description
opn7a Predicted to enable G protein-coupled receptor activity and photoreceptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; digestive system; eye; heart; and testis.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08385 OPN5; G0-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_01528013_01535266.mRNA True 1387 mRNA 0.54 4 1527909 1535266

Neighbor

gene id symbol gene type direction distance location
CI01000051_01511542_01512516 NA coding downstream 15355 1511143 ~ 1512554 (-)
CI01000051_01468663_01486168 B4GALT5, B4GALT6 coding downstream 40737 1468419 ~ 1487172 (-)
CI01000051_01371462_01386606 NA coding downstream 141303 1371462 ~ 1386606 (-)
CI01000051_01015039_01066156 CDH2 coding downstream 461592 1014806 ~ 1066317 (-)
CI01000051_00846746_00856041 AQP4 coding downstream 671868 846502 ~ 856041 (-)
CI01000051_01560871_01627451 TRAPPC8 coding upstream 25562 1560828 ~ 1627665 (-)
CI01000051_01644907_01652696 MCM3L, MCM3 coding upstream 109534 1644800 ~ 1652719 (-)
CI01000051_01716468_01720230 NA coding upstream 181193 1716459 ~ 1720908 (-)
CI01000051_01785489_01787612 IGFBP1A coding upstream 249216 1784416 ~ 1787760 (-)
CI01000051_01789888_01790134 NA coding upstream 254495 1789761 ~ 1790134 (-)
G218532 NA non-coding downstream 37030 1490663 ~ 1490879 (-)
G218521 NA non-coding downstream 84851 1439176 ~ 1443058 (-)
G218497 NA non-coding downstream 139396 1388257 ~ 1388513 (-)
G217813 NA non-coding downstream 349638 1178026 ~ 1178271 (-)
G217791 NA non-coding downstream 371859 1155817 ~ 1156050 (-)
G218558 NA non-coding upstream 10364 1545630 ~ 1545866 (-)
G218568 NA non-coding upstream 130438 1665704 ~ 1665926 (-)
G218569 NA non-coding upstream 131221 1666487 ~ 1666830 (-)
G218571 NA non-coding upstream 134001 1669267 ~ 1669721 (-)
G218572 NA non-coding upstream 134465 1669731 ~ 1669947 (-)
CI01000051_00560810_00563417 NA other downstream 960754 560768 ~ 563417 (-)
CI01000051_00394082_00407612 MTMR9 other downstream 1122114 392720 ~ 407612 (-)
CI01000051_00278614_00302552 NA other downstream 1245280 278192 ~ 304373 (-)
CI01000051_00224709_00227613 NA other downstream 1284883 224507 ~ 227613 (-)
G218728 NA other upstream 992077 2527343 ~ 2546459 (-)
G218861 NA other upstream 1305004 2840270 ~ 2840632 (-)
CI01000051_02955633_02960400 SCRN2 other upstream 1424322 2955380 ~ 2961148 (-)
G220041 NA other upstream 2620464 4155730 ~ 4158103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017892 opn7a coding NC_007131.7 CM002904.2 6241855 ~ 6278817 (-)