CI01000051_01560871_01627451 (TRAPPC8)


Basic Information

Item Value
gene id CI01000051_01560871_01627451
gene name TRAPPC8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1560828 ~ 1627665 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_01560871_01627451.mRNA
AGACAACAGGACTTTTATTATGGAAGACGTGGAGCTTTTATGTCATTGCGGAAGTAAAGTCACCTGACCGCCGCTAAGCTTCTTGGGCAAAATCGATCAGCAGGCAGCAGTAGATTTCAACATGTCTGCCGTTGGCTGTCAGTAAAGGAGGTATTTGTTTTCAACTCAACAACAGATCCGTGAGCTCGGTGAAGAACAGACGAGGCGCGCGCTCATGGCTCAGTGCGTGCAGTCAGTGCAGGAGTTCATCCAGGACTCGTTCGTGCCAATGGTGGCCGTCCTGTGCAGCGAGGATGCGGAGAGAGTGACCCGCAAAAACAACCTGACTTTCCCCGAGCTGCTGCGGCCTTTCTGCCGCCTGACGTCCGAGGGTCATCTGCGTGATCCCAACAACCAGGTGGTTGTGGTAAAGGGTCTTCGGATCAGCGTGACCGGGATCAATACGCGGCCTCCACAGACCCCAGAGCTGCAAAGGCTCCTCAGCCAGGCGGTTTCTGTCTGCCAGCCTCCTGAAGGGTCGCCTGGCAACGTCATCACGGCTGGAGACTACGACCTCAACATAAGCGACCGCACGGTCAAAGCGAGCGTTCCCTGGTACTCTGACTGGAAAGAAACACTCACCCAGCTGAGCTCGTCCAAGTACTTCACAGGTATTCCCTTCCTTCCCGTGCTGGGAGTGCGTGAGAGGGCTTTCCTCAGACGCCTTCTCCACATCATTTCCTGGCCCAGCTCGCTCCGTAGCAGAACTGTCGCTAAATCTCCTTTCCTCTTTCCAATCCAGCTTCCTCCGCTTTCTCCGGATGTTGGTGGTGGTCCTATAGCTTCTTGTGCTCAATTCAGTTCTGCTTCAATTATGGCGGACTCTGCGTACGAGGATATGAAACAGCGGTATGGTACTCAGGGCTGCTATCTGCTCAAGATAAACTCCCGGAGCGGTAGCACTGGTGCGGACGAACAGATGCCAGACCCGTGGAGTCAGTACTTACACAAGACCAGCATGCACAACCCTGAGCTGTATGAAGAATCTGCTGTGAATAATGCGGTTGAAAACAACATTGGTGCAGAGGAAGATGGTCTTGATCCTTCAGTTAGAGACGGCATCTCAGAGACTCATCCTCTGCAGCTGGACCAGTCCCCTGATGCCGGTTACCCCAGCAACAGCGCCAGTCAGTCTGTAAACAGCGTGGATGTGACGAAACCTCAAAAACAGGCCAGCGTGACCCCTCACACCCCTCCGACCCCTCGTGGAACCTGCCTGACCCTAAATGACCACGACCACATCCGGCAGTTTATCCAGGAGTTCACCTTCAGAGGATTACTGCCGCACATCGAGAAAAACATACGCCAGCTAAATGACCAGCTTGTCTCAAGAAAAGGCCTGAGCCGATCTCTTTTCACCGCCACTAAGAAGTTGTTTGGTGGAGGGAAGGTCCCAGAGAAGAGTATTGCTGAACTAAAGAACACTGCAGGGCTGCTCTATCCCTCCGAGGCTCCAGAGCTTCAGATCAGGAAGATGGCTGACCTTTGCTTTTTAGTTCAGCACTATGAGCTGGCCTACAACTGCTACCACACTGCCAAGAAGGACTTCCTCTCCGACCAGGCCATGCTATATGCCGCGGGAGCGCTGGAGATGGCTGCTGTCGCTGCCTTTCTGCATAACACGGCAGCCAGGCCGTACCCAGCACACTACATGGACACGGCCATTCAGACCTACAGAGATGGGTGCAAAAACATGCTTTTGGCTGAGCGGTGTTGTCTTTTAAGTGCTGAGATTTTGAAGAGTCAGGCCAAATACTCAGATGCTGCCACACTTCTGATCAAGATGACCAGTGAGGACTCTGACCTGCGGAGTGCAATCCTATTGGAGCAGGCGGCTCACTGCTTCATTAATATGCGCAGCCCCATGGTGAGGAAGTTTGCCTTCCACATGATACTGGCTGGTCATCGTTTCAGCAAAGCTGGACAGAAGAGACATGCACTGAGGTGCTACTGCCAGGCTTTGCAGGTGTATAAAGGTAAAGGTTGGTCACTGGCTGAAGATCACATCAACTTCACCATAGGTCGGCAGTCCTTCACTCTGCGGCAGCCGGAAAACGCAGTGGCCGCCTTCCGGCACATTCTCATCAATGACAGCAAACAGTCGGCTGTACAGCAGGCTGCTTTCCTCAGGGAATACCTCTATGTGTTCAAGAGCATGAGTCAGTTGACCGGTGAGAGCTCCCTCCCGCAGCTGCCCCTGCCCTGTCTGCACAGCTCACAAACACGCGTCTTCTTCGGCCATGAACGTAGACTCGCTGAAGGCGAGAAACAGGCCGCAACACATGTCACTTTGGATCAGGAGTTTGACCGCGATCTTTCCCAACTGTGGAGAGAGTTGGAGGAGCAGGTCGTCGCCGTGGCGAACAGAGGGACGGTGCCCATCACCTTCCAGCCCTCCCAGTGCTTCTTAAACAGCCAGACAGACAACCTCAGATACCCCCTCGCTGTGGTAGAGGAACCCATCATTGTGGAGGTGGTTTTCCGTAACCCCTTGAAGGTTCCCTTGGCTCTGTCGGCTCTGTCTCTGCTGTGGAAGTTTACTCTGAAAGACTTCTCAGACCCTCAGGGAGGCAAAACTGGAGAAACCATCACCAATGAGAAAGAGGCAGTGTCTTTGAAAGAAACCACGGCCCTCAATGACATCATTGATACGCAAGTCATTCCAGAGTTCACCATAAGTCCAGAGGAGACCAAAGTGGCTCGTTTGAAGCTGCTTCCTCGTAAGACAGGAGAGTTGCATGTTCTTGGTGTGGTGTACAACCTGGACACTGGAGAAGTGGGCAACAGTGAAGGCTCACCGGCCGGTGATCTGATGTGTGTGCGTGGACAGCAGAATCTGGAGATCCAGGGGCCCAGACTCAATGTGACCAAAGAAGAAAAGACTTCCGTCAGATATGGATCAGACCGCCGCCTGGACCCCATTATCACCCCTCCGATGCCCTTACTGGAGGTGTTTTTCATTAACTTCCCTACTGGTTTATTGTGTGGCGAGATCCGAAAAGCATGGGTGGAGTTTGTGAACGTGAGTGCGGTCCCTCTCACTGGTCTTCGGGTGGCATCCACACACCCAGAGTTCTTCACGTTCGGGAGTGCCACCTCTGACCTTACCCCAGTGACCCCCACAGCAGCAGAGCACTGCTCCGCCTACAAGACTGTGTCCATGCCCCCGTCAGCGGCCACTGTGACGCTCGTGTCACCAGCAGTGTTCGGGGTCACCAGCGGTGACCGGCCGGTGGTGGCAGAGATTCCCCTGTCACAAGGTGTGTTGGGACCAGGGGAGGCGTTACAGATCCCACTGTGGCTCAGGGGGCCTGACCGAGAGGGTGTCCATGAAATCAACTTCCTGTTTTACTATGAGAGTATAGAGAAGACTGCCAAACTCAGTGAAGCAGGTGTTCGTGAGTTCCACATAGTTCAAGTGTCCAGCAGCAGTCGGCAATGGAGGCTACACAAGTGCATCAACCCTGTGGGAGATAAAGACTCTAAGCTGGCCAGCAGGGAGAGGGGGAAGCTGTGCTTCAAAGCCACCAGATGCAGAACAGAGGAAGCTACTTCAGATGCAGCAGAAAAATACACCTTTGCCGACCTCAACCTTGGCAACGAACAAATTGTCAGCTCTACCACTCCATGTGCTGATTTTTTCTTCCGGAGGAGTCTGCCCGCTGAGCCCAGGAGAGGAGGCGTGTCCGCAGGTGGTGCTAGTCAAATGCAGAGACACAACCTCCCGCCTCAGAGCGGGATTGATGAGAGTGTTACAAACATCATCAGAAAATGCAGTGAAGCATATGTTGTGGAGGATAACAAGCAGCTCATTTTAGAGGGGCAGCTTCATGTTGCACTGCAAACCATTGGCAAAGAGGCCTGCTCGCTCTCGCAGAAAGAGGAAACTCAGGAGATGGTGCTTTTGAAGTTCAAGCCTGACATTCCACCTCCTGTAGACGTCATCATTGATCTGCGGCATAAAACGACCAGCCCGGAGTCTCTGGAAGTGCATGGTTCGTTTAGCTGGCTGGGCCAGACCCAATATAAGTTGCAACTCCAAGCACAAGAGGTGTACACGCTTTCCTTGAAAGCCTGTTTCTTCCAGGCTGGAGTTTATAATTTGGGCACACCTCGTGTTTTTGCCAAGTTGGCACAGACCAGCGCTATGTGTGAGACCAGCCAGCAGAGCGCCATGCCTGCGCTTATTATCATCAACAGCGTTTGAGTAACTCCGCGACGTTGTCCTGTTCTCAGCTCACCTAAATAAA

Function

symbol description
trappc8 Orthologous to human TRAPPC8 (trafficking protein particle complex subunit 8).

GO: NA

KEGG:

id description
K20305 TRAPPC8, TRS85; trafficking protein particle complex subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_01560871_01627451.mRNA True 4289 mRNA 0.53 28 1560828 1627665

Neighbor

gene id symbol gene type direction distance location
CI01000051_01528013_01535266 OPN7A coding downstream 25562 1527909 ~ 1535266 (-)
CI01000051_01511542_01512516 NA coding downstream 48274 1511143 ~ 1512554 (-)
CI01000051_01468663_01486168 B4GALT5, B4GALT6 coding downstream 73656 1468419 ~ 1487172 (-)
CI01000051_01371462_01386606 NA coding downstream 174222 1371462 ~ 1386606 (-)
CI01000051_01015039_01066156 CDH2 coding downstream 494511 1014806 ~ 1066317 (-)
CI01000051_01644907_01652696 MCM3L, MCM3 coding upstream 17135 1644800 ~ 1652719 (-)
CI01000051_01716468_01720230 NA coding upstream 88794 1716459 ~ 1720908 (-)
CI01000051_01785489_01787612 IGFBP1A coding upstream 156817 1784416 ~ 1787760 (-)
CI01000051_01789888_01790134 NA coding upstream 162096 1789761 ~ 1790134 (-)
CI01000051_01809480_01841801 ADCY1A coding upstream 181815 1809480 ~ 1841801 (-)
G218558 NA non-coding downstream 14962 1545630 ~ 1545866 (-)
G218532 NA non-coding downstream 69949 1490663 ~ 1490879 (-)
G218521 NA non-coding downstream 117770 1439176 ~ 1443058 (-)
G218497 NA non-coding downstream 172315 1388257 ~ 1388513 (-)
G217813 NA non-coding downstream 382557 1178026 ~ 1178271 (-)
G218568 NA non-coding upstream 38039 1665704 ~ 1665926 (-)
G218569 NA non-coding upstream 38822 1666487 ~ 1666830 (-)
G218571 NA non-coding upstream 41602 1669267 ~ 1669721 (-)
G218572 NA non-coding upstream 42066 1669731 ~ 1669947 (-)
G218573 NA non-coding upstream 46786 1674451 ~ 1674681 (-)
CI01000051_00560810_00563417 NA other downstream 993673 560768 ~ 563417 (-)
CI01000051_00394082_00407612 MTMR9 other downstream 1155033 392720 ~ 407612 (-)
CI01000051_00278614_00302552 NA other downstream 1278199 278192 ~ 304373 (-)
CI01000051_00224709_00227613 NA other downstream 1317802 224507 ~ 227613 (-)
G218728 NA other upstream 899678 2527343 ~ 2546459 (-)
G218861 NA other upstream 1212605 2840270 ~ 2840632 (-)
CI01000051_02955633_02960400 SCRN2 other upstream 1331923 2955380 ~ 2961148 (-)
G220041 NA other upstream 2528065 4155730 ~ 4158103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017893 trappc8 coding NC_007131.7 CM002904.2 6308564 ~ 6476705 (-)
bowfin (Amia calva) AMCG00019328 NA coding CM030124.1 CM030124.1 14837230 ~ 14895216 (-)