CI01000051_02955633_02960400 (SCRN2)


Basic Information

Item Value
gene id CI01000051_02955633_02960400
gene name SCRN2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 2955380 ~ 2961148 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_02955633_02960400.mRNA
AGATCGGAACTGAAGAATCTGTGAAATGGAGGTCAGGCGATAAGCCTTATATACTGTCCAGCACTGAGACTTAACATCACTACAGTAATCCTCAGCACTCCTGTCAGTGCAGCACATTTACCTACTGCTGCAGAAGCCGCACGATATCACAGCTTTATACATGTAAACAAATGATTGCTCATCCGCGCTTTCTCATGTAGAAATGTCAGTTTATCCAGTAGTATTTTTAGTTCTTTTAATATTTGGTTTCATGTATTGCATAAATGTGTATTATTATCGCCTTGGTAGTATTAGTATTAGTATTATCAAGCCAGCAACGAACCACAAATTCTCGGAGTTTGTTTATGCGCAATGGCCCCTAGAAGAAACCAATGACCTTTGACCACAAGCCTGCGTAATCAAACTCAGCATGGATTTTTACCAAAATAATTCAAAATTAAATGTTTGAAAGAAATTCCGTTTCTGTTAGTGAAATGGTTTATGCTTGTGTTGGAATATTTAAATGGAATATATTAAAATGAATAATGAAAATATTTTATAGTACATTCAAATTGTATTATTATTTAAATAATCAGTTCCAAATTAGAATAGTAGTTCTTGTACAAATTTTCTTTTTAGCTTTTTTGATTAGGGATCTAAGCATAAGCCTGTGTATGTCATAATTTATCTGTCCTTTTTCAAATGGGTATGTTGTTGTCATTTGAATCTGATCCACTGCATTGATCCTCATGTATTGATTTGATATAGGATGGCTGAACCGCCTCGGTCATGTGACTGTTTTGTATCTCTGCCTCCGGGTTCAAAAGAAGATTATGTGATCTTTGGTAAGAACTCTGACCGGCCGAGAGATGAGGTGCAGGAGGTGGTGTATTACCCTGCGTCATCACACGCTGCTGGCTCTACAGTGGAGTGCACATACATTTCTATCCCTCAAGTAGAGCACACTCATGCAGTTGTGCTGAGCAGACCGGCCTGGCTCTGGGGGGCTGAGATGGGGGCGAATGAACACGGGGTGTGTATTGGGAACGAGGCAGTCTGGACCAAGGAGCCTGTGAATTCAGAAGAAGCTCTGCTGGGAATGGACCTGGTTCGGCTGGGTCTGGAGCGTGGGGACAGTGCATGGGCCGCTCTGAATGTGATCACAGGTCTGCTGGAGCAGCACGAGGGAGTCAAGAACATCTCCAACCAGCTGACGATAGGCACAGAGATCTCAGCGGAGCATCCGGAGCTGCGCGGTGTGGCCCAGGCTCAGGGCTGGTGGAGCGGTGAGGGGGAGTTCAGCTTCACTGCTGTCTTCAGCCCTGACAACCCCCCCGCCAGGATGGAAATGGCCAAGCAGCGGTACATGGGCGGCACAGCCCTGCTCCAGCAGCACAACGGCTCGGTGACGGCAGAGGTGATGATGAGCATCCTGAGAGACAAGGCCAGCGGGATCTGTATGGACTCTGAGGGCTTCCGTACCACAGGCAGCATGGTGTCCATCCTCCCGCGCAACCCAGAAGTGCCCTGCGTTCACTTCCTCACTGCCACACCCGACCCCTCCAGGTCTGTATTCAAGCCTTTTATCTTCTCGGAGAGCATGAGGCCTGTCAGCATGGTGATGTCTCCGCAGTACGGCCCAGACGATCCTGTTAGGACACAGCCTCGATTCCAGCACCAGGTGGACCGGAAACACGAGCTGTACAAAGCCCACCAGACGGCACTGACCAGTCCTGATGCTGGAGTCTCTCTACAGGAGACTATGAGATACCTGGAGTCTCAGTGTCTTGAGGAAATCGAGGCCATGCTTAGGGGTGAGATACAGGGCCAGGAGCTCGGGGATCTGTTCTTCGACTGCGTGGACGCGGAGATCAAATTCTACCAGTGAGACAGAGCAGGTAAACGGACAATTGTCACGCATCTGACCAGAGTCTTGCTCTGTCTGGTGTTGCCTGTAACCTGTGGCTGTTTTGCAGTTGTCGTTGTGAATGTCACTAGTGCTTGCTGATCTGCCTGGAGAGAGAGAGACAGTCCAGAGCGCACAGGTTCCTGCCTGCTCAAATCCTGCTCTCCTAGTTCCCCTGATGCCATGCCAAACTAATCGTGACGTCCATGCCACACTAACTGTAACTTAAAATAAA

Function

symbol description
scrn2 Predicted to enable cysteine-type exopeptidase activity and dipeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human SCRN2 (secernin 2).

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
K14358 SCRN; secernin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_02955633_02960400.mRNA False 2120 mRNA 0.48 7 2955380 2961148

Neighbor

gene id symbol gene type direction distance location
CI01000051_02941319_02952102 NA coding downstream 3278 2941312 ~ 2952102 (-)
CI01000051_02920005_02939882 NA coding downstream 15498 2919457 ~ 2939882 (-)
CI01000051_02918395_02918916 NA coding downstream 36464 2918316 ~ 2918916 (-)
CI01000051_02561929_02569617 NA coding downstream 385145 2561077 ~ 2570235 (-)
CI01000051_02391113_02451758 NA coding downstream 503622 2389882 ~ 2451758 (-)
CI01000051_02966203_03000592 NA coding upstream 3023 2964171 ~ 3000592 (-)
CI01000051_03046276_03073660 NA coding upstream 85088 3046236 ~ 3073660 (-)
CI01000051_03097507_03106516 METTL13 coding upstream 136318 3097466 ~ 3106516 (-)
CI01000051_03155236_03166801 PRRC2C coding upstream 194088 3155236 ~ 3166801 (-)
CI01000051_03180720_03207872 NA coding upstream 219411 3180559 ~ 3208448 (-)
G219958 NA non-coding downstream 52100 2903037 ~ 2903280 (-)
G218881 NA non-coding downstream 80504 2874623 ~ 2874876 (-)
G218848 NA non-coding downstream 270385 2684739 ~ 2684995 (-)
G218831 NA non-coding downstream 371954 2583211 ~ 2583426 (-)
G218829 NA non-coding downstream 376115 2578977 ~ 2579265 (-)
G219924 NA non-coding upstream 78478 3039626 ~ 3040912 (-)
G219989 NA non-coding upstream 151959 3113107 ~ 3113493 (-)
G219997 NA non-coding upstream 239760 3200908 ~ 3201537 (-)
CI01000051_03224206_03232403 PLPP6 non-coding upstream 258975 3220123 ~ 3232403 (-)
G219913 NA non-coding upstream 282740 3243888 ~ 3244557 (-)
G218861 NA other downstream 114748 2840270 ~ 2840632 (-)
G218728 NA other downstream 408921 2527343 ~ 2546459 (-)
CI01000051_01785489_01787612 IGFBP1A other downstream 1167620 1784416 ~ 1787760 (-)
CI01000051_00560810_00563417 NA other downstream 2388225 560768 ~ 563417 (-)
CI01000051_00394082_00407612 MTMR9 other downstream 2549585 392720 ~ 407612 (-)
G220041 NA other upstream 1194582 4155730 ~ 4158103 (-)
G221575 NA other upstream 2552804 5513952 ~ 5518824 (-)
G221840 NA other upstream 3171625 6132773 ~ 6133579 (-)
G222729 NA other upstream 5381001 8342149 ~ 8342652 (-)
G222730 NA other upstream 5381822 8342970 ~ 8343438 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location