XLOC_009677


Basic Information

Item Value
gene id XLOC_009677
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7226676 ~ 7232180 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019407
gaaaagattttaacattaacattaaacattATACAATATCTATATTGATatttaacattatacaaatgtatttttagcTATGCATGCAACAAAAATCACATATCAGCAATATCATACAGAGATTCCTGCTTTACTGAACACTACTAAAGATGGTGTTGACTCAATAAGTGTGCTTTAATTTAGTGCATAACACAAGATGTGCTTCAGAATAGTCATAGCAGTGCTAAAAAAAAGCACAGGGTTGTACCTGCAGTTTGGAAGCTCCACCTTTAATGAGACCACAGATAATCTGCTCCACCCTCTCAGGGTCTCTGATGTGAACGGTGTTTTTCTCGAACTCTGGCATCTGCAGCAACAAGAAACAACCAATGAGATCGAGGCATTCAGTGGTGTGCTGAAATATTCCCTCCCTTCTCCCTAAAGCCTTGCTGATGTCACTGTCAGGAGGAGGAGCCAAAGGAGAGCAGACGCTGCAGTCTCACAACCATACAGAAGAAACACACACAAGCTGCAGTCTTTAAGAAGAAATCCACTGAGGCAGAAGACAATAATAAACCACAGGTTTTCATCTTTACACACTGATTCTTCAATGTATGAGGGCTCAATGAATGTCTCAAGACCATTACTGATACTGAGGATTGATACAACTCATCAAGCAAGAACATTTGAGCTTGTTTACCATATTTGAAGTGTGCTAATCAGTGTTTACATGCTAATGACAGGCAATCACATTAAGCAGTTGTGTCTCTATGTCTGAATTAAAACAATTTGACTTGTATGGGTTGTTTACATCGTCTTTACAAAGATTTTGAAGTGTGAAAGTTTTGGTGAAATGGACTTTCAGTGAAAGGACAAGAATCTCTCGGGTTTCAATCAAAACACATTAAAGCGGTACAGTAGTTTACCCCAAACTTTTGCCattgtttttttacttgttctaaacctgttttcTTTCTTCTGAACACACAAGGGAAGAAATACTCAAGAATGCTGGGGATAAAACAGCCATTAACTTTGATGTCATTGGCAGATTGTTTTGTAACCTTATTCAGAATATTTTGTTTGTGTAGGCAAAAACAATCCCTAAAGTTTATAACAAGTTGAGTAAATGTTGAGACTTTAGGTGAGATATCTCTTGTGTTTCAAAAGACAAAAACCTTTGAGCATGAGTAAAAGTTGAATTTTTAATTTCGTATGAACAAAGTTATCAATACCAAAATAAAATGGCCTGTTAAATGA

Function

GO:

id name namespace
GO:0050254 rhodopsin kinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019407 True 1239 lncRNA 0.36 2 7226676 7232180

Neighbor

gene id symbol gene type direction distance location
XLOC_009676 bmper coding upstream 31676 7154266 ~ 7195000 (+)
XLOC_009675 NA coding upstream 108108 7118147 ~ 7118568 (+)
XLOC_009674 bbs9 coding upstream 163727 6957582 ~ 7062949 (+)
XLOC_009673 eaf1 coding upstream 271131 6944311 ~ 6955545 (+)
XLOC_009672 arhgef2 coding upstream 293498 6864244 ~ 6933178 (+)
XLOC_009679 sri coding downstream 10430 7242610 ~ 7260345 (+)
XLOC_009680 atg5 coding downstream 148283 7380463 ~ 7416532 (+)
XLOC_009681 NA coding downstream 282670 7514850 ~ 7515507 (+)
XLOC_009682 CT574585.2 coding downstream 332347 7564527 ~ 7566095 (+)
XLOC_009683 stx12l coding downstream 394355 7626535 ~ 7641367 (+)
XLOC_009668 NA non-coding upstream 805227 6395303 ~ 6421449 (+)
XLOC_009659 NA non-coding upstream 1723977 5499274 ~ 5502699 (+)
XLOC_009654 FO722028.1 non-coding upstream 2352195 4874364 ~ 4874481 (+)
XLOC_009650 NA non-coding upstream 2514948 4708735 ~ 4711728 (+)
XLOC_009688 NA non-coding downstream 560541 7792721 ~ 7793768 (+)
XLOC_009691 NA non-coding downstream 1123299 8355479 ~ 8372570 (+)
XLOC_009696 NA non-coding downstream 1732709 8964889 ~ 8965839 (+)

Expression


Co-expression Network