Item | Value |
---|---|
gene id | XLOC_000968 |
gene name | NA |
gene type | non-coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007112.7 |
NCBI id | CM002885.2 |
chromosome length | 59578282 |
location | 6060026 ~ 6085752 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
id | name | namespace |
---|---|---|
GO:0000003 | reproduction | biological_process |
GO:0022412 | cellular process involved in reproduction in multicellular organism | biological_process |
GO:0022414 | reproductive process | biological_process |
GO:0048477 | oogenesis | biological_process |
GO:1905516 | positive regulation of fertilization | biological_process |
GO:0035803 | egg coat formation | biological_process |
GO:0043902 | positive regulation of multi-organism process | biological_process |
GO:0035036 | sperm-egg recognition | biological_process |
GO:0007276 | gamete generation | biological_process |
GO:0080154 | regulation of fertilization | biological_process |
GO:0007281 | germ cell development | biological_process |
GO:2000241 | regulation of reproductive process | biological_process |
GO:2000243 | positive regulation of reproductive process | biological_process |
GO:0048609 | multicellular organismal reproductive process | biological_process |
GO:0007339 | binding of sperm to zona pellucida | biological_process |
GO:0007340 | acrosome reaction | biological_process |
GO:0034587 | piRNA metabolic process | biological_process |
GO:1990511 | piRNA biosynthetic process | biological_process |
GO:0009988 | cell-cell recognition | biological_process |
GO:2000344 | positive regulation of acrosome reaction | biological_process |
GO:0032504 | multicellular organism reproduction | biological_process |
GO:0060046 | regulation of acrosome reaction | biological_process |
GO:0035804 | structural constituent of egg coat | molecular_function |
GO:0019899 | enzyme binding | molecular_function |
GO:0034584 | piRNA binding | molecular_function |
GO:0032190 | acrosin binding | molecular_function |
id | description |
---|---|
ZDB-GENE-080225-12 | Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in several processes, including establishment of cell polarity; establishment of centrosome localization; and establishment or maintenance of epithelial cell apical/basal polarity. Predicted to be active in several cellular components, including adherens junction; apical junction complex; and apical plasma membrane. Is expressed in several structures, including EVL; intermediate cell mass of mesoderm; periderm; sensory system; and tegmentum. Orthologous to human PARD3B (par-3 family cell polarity regulator beta). |
ensembl_id | ENSDARG00000113935 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00003319 | False | 25727 | lncRNA | 0.36 | 1 | 6060026 | 6085752 |
TCONS_00001536 | True | 542 | mRNA | 0.46 | 2 | 6068436 | 6085750 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_000967 | pard3ba | coding | downstream | 31150 | 5798548 ~ 6028876 (-) |
XLOC_000966 | nrp2a | coding | downstream | 313996 | 5606460 ~ 5746030 (-) |
XLOC_000965 | fn1b | coding | downstream | 516961 | 5504128 ~ 5543065 (-) |
XLOC_000964 | mnx2b | coding | downstream | 604524 | 5449777 ~ 5455502 (-) |
XLOC_000963 | ndfip2 | coding | downstream | 665235 | 5354489 ~ 5394791 (-) |
XLOC_000969 | NA | coding | upstream | 73879 | 6159631 ~ 6173701 (-) |
XLOC_000970 | mdh1b | coding | upstream | 132880 | 6218632 ~ 6225285 (-) |
XLOC_000971 | NA | coding | upstream | 312447 | 6398199 ~ 6400326 (-) |
XLOC_000972 | klf7a | coding | upstream | 317799 | 6403551 ~ 6494384 (-) |
XLOC_000973 | CU571320.1 | coding | upstream | 367652 | 6453404 ~ 6453519 (-) |
XLOC_000962 | NA | non-coding | downstream | 707584 | 5350872 ~ 5352442 (-) |
XLOC_000961 | NA | non-coding | downstream | 863305 | 5195078 ~ 5196721 (-) |
XLOC_000960 | NA | non-coding | downstream | 906198 | 5148593 ~ 5153828 (-) |
XLOC_000959 | FQ790365.1 | non-coding | downstream | 981538 | 5078371 ~ 5078488 (-) |
XLOC_000958 | NA | non-coding | downstream | 1274566 | 4783785 ~ 4785460 (-) |
XLOC_000974 | CABZ01075316.1 | non-coding | upstream | 1056287 | 7142039 ~ 7142143 (-) |
XLOC_000975 | NA | non-coding | upstream | 1459297 | 7545049 ~ 7554339 (-) |