CI01000051_05406563_05413826 (PSMC6)


Basic Information

Item Value
gene id CI01000051_05406563_05413826
gene name PSMC6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5406207 ~ 5413839 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_05406563_05413826.mRNA
AGCGGCAGTAAACATGGCGGATAACAGGGAGAAAGGTTTACAAGACTACAGAAAGAAATTATTGGAGCATAAAGAGATTGACGGACGCCTCAAAGAGTTGAGAGAGCAGCTGAGGGAGCTCACTAAACAGTATGAGAAGTCTGAGAATGATCTGAAAGCTTTACAGAGTGTGGGACAGATTGTTGGTGAGGTGCTGAAACAACTGACCGAAGAGAAATTTATTGTAAAAGCAACCAATGGCCCACGCTATGTTGTTGGATGTCGCAGACAGCTGGATAAAACCAAGCTTAAACCAGGCACTAGAGTGGCTCTGGACATGACGACTCTCACTATCATGAGGTATTTGCCTCGGGAGGTTGATCCTCTAGTGTACAACATGTCCCACGAAGATCCTGGCAGCGTTTCTTACTCGGAGATCGGTGGATTGTCGGAGCAGATCCGTGAGCTGAGAGAGGTAATTGAGCTTCCTCTGACCAATCCTGAGCTGTTTCAGAGGGTGGGCATCATCCCTCCCAAGGGCTGCCTCCTGTATGGCCCTCCAGGCACTGGAAAGACCCTTCTTGCCAGAGCTGTGGCCAGTCAGCTGGACTGCAACTTCCTGAAGGTTGTGTCCAGCTCCATTGTTGACAAGTACATTGGTGAGAGTGCCAGACTCATCAGAGAGATGTTCAACTATGCCAGAGACCATCAGCCATGCATTATCTTCATGGATGAGATCGATGCTATTGACATTGAGTTGCCCAACGAACAGGCTCGACTGGACATCATGAAGATCCACTCTGGGCCCATCACCAAGCATGGAGATATAGATTATGAAGCCATCGTCAAGCTTTCAGACGGTTTCAATGGAGCAGATCTGAGGAATGTGTGCACTGAAGCTGGTATGTTTGCCATTCGTGCGGACCGTGATTATGTGACTCAGGAGGATTTCATGAAAGCTGTGAGGAAGGTGGCAGACTCCAAGAAGCTGGAGTCCAAACTGGACTACAAACCTGTATAAAACCACATTTTTGTGCAAAGTATAAATGTGAGGGGTTAGTCAGATATCAACACACTGTCTATGGACACTTTTTTTTTTTTTTTTCTTTTCTTTTTTTTAAGTTACTGCAATAGATTTTTTTTTTTTTTTTTTTTTTCAACATTTGAAAACATTTCCATTGCTACCATCAAGTGATTTAAGTTGTTCAGTTAATGCATTGTTTAACCCCAATTTAATACAAATTATTACCTGTTGGCCAAGTATGTAGACCTGAAATGATATGGCTCTTTATAGTTCTGTGTGATCAGTTATATAAACTGTGTGTGTGCCTGGCCCGCTTCCTTACACATCATTAAAGTCAATGATAAAGAAATAAA

Function

symbol description
psmc6 Predicted to enable ATP binding activity and peptidase activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein catabolic process and proteolysis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex and proteasome regulatory particle, base subcomplex. Orthologous to human PSMC6 (proteasome 26S subunit, ATPase 6).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K03064 PSMC6, RPT4; 26S proteasome regulatory subunit T4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_05406563_05413826.mRNA True 1356 mRNA 0.44 12 5406207 5413839

Neighbor

gene id symbol gene type direction distance location
CI01000051_05379132_05400538 DDHD1B coding downstream 4865 5378739 ~ 5401342 (-)
CI01000051_05363504_05371413 STXBP6L coding downstream 34794 5363477 ~ 5371413 (-)
CI01000051_05211168_05234819 KCNK10A coding downstream 171388 5211150 ~ 5234819 (-)
CI01000051_05153491_05155816 NA coding downstream 248376 5153322 ~ 5157831 (-)
CI01000051_05056299_05068578 NA coding downstream 337210 5056265 ~ 5068997 (-)
CI01000051_05447070_05450078 NA coding upstream 33060 5446899 ~ 5450475 (-)
CI01000051_05545276_05570550 RAD51B coding upstream 131220 5545059 ~ 5570550 (-)
CI01000051_05595595_05606236 NA coding upstream 181198 5595037 ~ 5606252 (-)
CI01000051_05646139_05649781 5NT1A, NT5C1BB, NT5C1A coding upstream 231839 5645678 ~ 5649948 (-)
CI01000051_05679116_05685755 KCNK5B coding upstream 264932 5678771 ~ 5685956 (-)
G221619 NA non-coding downstream 149104 5256196 ~ 5257103 (-)
G221572 NA non-coding downstream 201197 5204786 ~ 5205010 (-)
G220697 NA non-coding downstream 243828 5162146 ~ 5162379 (-)
G220695 NA non-coding downstream 248071 5157905 ~ 5158136 (-)
G220689 NA non-coding downstream 253984 5151888 ~ 5152223 (-)
G221586 NA non-coding upstream 5253 5419092 ~ 5484190 (-)
G221592 NA non-coding upstream 97425 5511264 ~ 5513474 (-)
G221714 NA non-coding upstream 222533 5636372 ~ 5636928 (-)
G221715 NA non-coding upstream 223751 5637590 ~ 5637845 (-)
G221716 NA non-coding upstream 229475 5643314 ~ 5643593 (-)
G220041 NA other downstream 1248104 4155730 ~ 4158103 (-)
CI01000051_02955633_02960400 SCRN2 other downstream 2444713 2955380 ~ 2961148 (-)
G218861 NA other downstream 2565575 2840270 ~ 2840632 (-)
G218728 NA other downstream 2859748 2527343 ~ 2546459 (-)
CI01000051_01785489_01787612 IGFBP1A other downstream 3618447 1784416 ~ 1787760 (-)
G221575 NA other upstream 100113 5513952 ~ 5518824 (-)
G221840 NA other upstream 718934 6132773 ~ 6133579 (-)
G222729 NA other upstream 2928310 8342149 ~ 8342652 (-)
G222730 NA other upstream 2929131 8342970 ~ 8343438 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G312492 NA non-coding NC_048568.1 CM023222.3 5130863 ~ 5131180 (-)
bowfin (Amia calva) AMCG00000263 psmc6,prs10,LOC107668141,LOC107582103,LOC107549540 coding CM030141.1 CM030141.1 9011195 ~ 9017940 (-)