CI01000051_05514127_05516929 (ZFP36L1B, ZFP36L1)


Basic Information

Item Value
gene id CI01000051_05514127_05516929
gene name ZFP36L1B, ZFP36L1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5512756 ~ 5517785 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_05514127_05516929.mRNA
ATATAAAAAAAAACAAGCTGAAATAGACTTTGAAAAGCACTTCTGTGAATACTTTGAATATAGCTGTAAAGCTCTGATAAAAATTGAAACCCAAGGTCAGGGTCTTTGGCGAGGAACGTTGCGGTTGACAAAGCGTTGAGGACAGGAGGTCCTGATGGGTCAGCTAAATCTGCAGAAATTTTTTTCAGGTAATGTTTGGTGAAAACAACACAAAGGAAACCAGAAACTATCAGAGGCATGCTAAACATGCCAATGGATTTAAAGGATCAAGACCCTGGAAGCATGCAGTGAAGGAGAATATGCTGGCTGCTGTTGTCCAGCACGTACTGTATACTGTGCAGTGCGTCCTTATCTTTAGTTTGTTGGCCTCATTAAAAAAAAAAAAAAACAATCATTGAAGGAAAATAACAATCTATGTACATGACAATCTAAAGCTTTTCACTACTGCACATTTCAGAGATAAGAAAGCCATACATGTGTACTAAAAATGACTAAATCAAGCCAAGTCTTTTTATGCATCTTTCATGTTCCCTTAGTCATGCATTCTTTCCCTCACTTCATTCTTTAAAATGTTCAGATCAAGGGACCATGCTTTCCTTCTATTCAAAATGCACCCATATTTTCATGATCATATTTTTAAACAATGCTTCTATATGGTGCCTTTGAATAAACTATATTTTAAAACAAAATCATTGTAGATTTTCTCTCTCTCCCTCTCTCTCTCTCTCATATATATATATATGTATATATATATATATATATATATATATATATATATATATATATATATATACACACACACAAACATTAAAAATTCATAGCTGGAATTTCTATTTATTTTTTTTAGTGTACAATACAGCTTTTTTGCTTACACTGAGACCCACTGTCCATTTAAAAATAACATTTAATATGATATTATGACTTAGGCTACTAATGTCACCTCTCAGCTTCACTTTAGTCAAACTCATTTGTGTTGTTTAAAGATTTAATAGCTATTATTGAAATGCTCTGAATGGGTTGAGTGAAACGCTCAGGAAGAACTCCATGTTGTGGTTAAATGTATGGTAATGAAGTTTCGAAGAAATGAAGTTTCGTAATCTGTTGAGTCAACGTAGTGCTATACATCACTTCAAAGCGCCAGAGAGAAGTGCGGTAAAGAGGCATGGTCAGAAATAACCCCGCCCATTCTGCCAGGAAGACTGCGCAAGTTTTTATAAAGGATATGCGCGCAAGTTTTGGCAGGACAGAGGGGGCTCTCTGCGGGGCAGAACTATATCAAAGACCCTTCAAACACAGGAATACACCCACCGTGCCTTAACAAACCATCTATTTGTCAACTCTTAAGTATTTTCAACAACCCCCGATTCGACAATGACTGCGACCGTCGTGTCTTCTTTCTTCGACTACGAAGTGACGAATAAGAACAATAAGTTGATGACCTACAACAGTCAACTCTCCAGTCCCCATTTACAGTCTGTCCCCTCCACTGGTGCCAATACCCCCTTTAACCCCACCGGGTCCCTGCTGGACAGGAAGGTGGTGGGTACTCCTTCAGTGGGACTCTACCAGCGTCGCCACTCTGTGTCCGTTACCAGCTCCAAATCAACGCAGAACCAATTTATTAACAGTCTCAAGATGGAAGGCTCGGCTTCCATGAATGGGAGCAGTAACAACAAGGAGAACCGCTTTCGTGACCGGTCATACTCTGAAACCGGGGAGCGTCTAAGGCCGAGCAACATCACGTGCATTAGTGCCAACGGAAACAGCCAGGTCAACTCTAGCCGCTATAAGACCGAACTCTGCAGACCCTTCGAGGAGAATGGCACTTGTAAATATGGCGACAAGTGCCAGTTTGCCCACGGGATGCACGAGCTTCGTAGTCTAAATCGCCACCCCAAGTACAAGACCGAGCTCTGTCGCACCTTCCACAGCATTGGTTACTGCCCGTACGGGCCGCGTTGCCACTTCATCCACAACGCAGAGGAGCGCCGCGGACCCCCTCCTCTTTCCGCTTTCAACAAGATGGATCGCCCCCGCCTTCATCACAGCTACAGTTTTGCTGGTTTCCCAAGCTCAGGTGGCTCCCAGGACAGCCCAACCTCTGTCACACCTCCACCCATATTTTCCAATGAAGACATCAACGAGTGGCCCAGCAACCCCTTCACTTTCTCAAGTCAAGAGCTCGCCAACCTGTTTGGGCCCAGTTTAGGTGGCACCACTGTTCCTGATCTGCACGGTCCTCACTCACCCACCACACCCTCTTTCTTCAGGCCCATGTCCGAGTCTCCCCCAAGCCCTCCGGACTCCCTCTCCGACCAGGAGGGCTACCAGAGCAGCCTGGGCAGCCAGAGCGGATCTGAGTCACCTGTGCTGGATGCGACACGTCGCCTTCCCATCTTCAGCAGACTCTCCATCTCTGACGATTAAAACCTTCCCTCAGAGATTTCAGGCCTGAGAGAGACAAAGCAGAGAAAGAGCTGGCGAGAAAGAGAGAGTAATTTTCCTCCTAGCAATCCCTTCCTGTCCTTGGTTTGTTTACAGCAGAGAAGTGGACTAAAGTACAGTGTTCTCATAGCCACTGAGTCAAATCAGAAACCATATTACCCTGTAGCATCAGCTTTGAGCGAATACCCATGCCTCGCTAAACAACTTTAACATGCCCGATGTAATGCAAAAAAACCGAACTGTTTGCCTCTAGGCCCACTCGAATGTTGAGGTCTCAAAATCCTCAGTGGAACATGTTAAACAAATCCATATTTAGTTCAGTTTGTTCAAACTTAAGAGCATAGTTTTCTAAATTGTTCAAGGATGTTCTTGTTCAAAGAATCTACTGAATATTATAGCAACAATGTGCTTTACAGACCTGAAAGTGCCACTTTTCTTGCAGAAAACTCTCAGCGGTAGATCGTCGAGACTTAAAGTGCCTATCAAACAATTACTACTTTTCCAGTCACATTGATTTTTTGGAGATCTGGGGTAGAAAAGTTTAAAAAAAAAAAAAAAAAAAAAAAGAATTAAACCCATCTTAGAGCTGTATGAATCATTCTGAGAGATATATGTATGTCTAGTGGTGCTAAATGTGCTGTCACCTTGGTAATTATCCCTAGAACATGTGATCCCTTGCGCTAAAATAGTGTCTGCTGGTTGTTGGATTATGTTAGAGAGAATATGTGTGAGAGAGGACATCCTTCCTTTATTCCTTCTGTTCATGTTACCACTAAAGATGTGACTTCAGTGGCCACTAATTGTTTCGTTGTAAACAGATCGTTGAAATGTTCTATCA

Function

symbol description
zfp36l1b Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Is expressed in several structures, including epidermis; nervous system; neural crest; neural plate; and ventral mesoderm. Orthologous to human ZFP36L1 (ZFP36 ring finger protein like 1).
zfp36l1 Enables 14-3-3 protein binding activity and mRNA 3'-UTR AU-rich region binding activity. Involved in several processes, including cellular response to hormone stimulus; regulation of mRNA metabolic process; and regulation of myeloid cell differentiation. Acts upstream of or within regulation of mRNA stability. Located in P-body and nucleus. Part of ribonucleoprotein complex.

GO:

id name namespace
GO:0061158 3'-UTR-mediated mRNA destabilization biological_process

KEGG:

id description
K18753 ZFP36L; butyrate response factor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_05514127_05516929.mRNA True 3283 mRNA 0.43 2 5512756 5517785

Neighbor

gene id symbol gene type direction distance location
CI01000051_05454570_05480649 NA coding upstream 31821 5454532 ~ 5480935 (+)
CI01000051_05401881_05405868 NA coding upstream 106870 5401881 ~ 5405886 (+)
CI01000051_05320361_05322570 GJD2B, GJD2 coding upstream 188851 5320361 ~ 5323905 (+)
CI01000051_05314994_05317995 ACTC1B, ACTA2, ACTA1, MGC53823, ACTC1, MGC75582, ACT3, ACTC1A, ACTA1A, ACT2, ACTC1.L coding upstream 194571 5314444 ~ 5318185 (+)
CI01000051_05296858_05301152 NA coding upstream 211422 5296684 ~ 5301334 (+)
CI01000051_05523573_05525861 NA coding downstream 5577 5523362 ~ 5527007 (+)
CI01000051_05579061_05584087 CRIP2 coding downstream 61276 5579061 ~ 5584087 (+)
CI01000051_05588671_05593438 RDH14B coding downstream 70507 5588292 ~ 5593977 (+)
CI01000051_05657394_05672861 SYT14B, SYT14 coding downstream 139609 5657394 ~ 5674202 (+)
CI01000051_05712567_05728993 YLPM1 coding downstream 194782 5712567 ~ 5729691 (+)
G220856 NA non-coding upstream 14097 5498104 ~ 5498659 (+)
G220850 NA non-coding upstream 22469 5490068 ~ 5490287 (+)
G220846 NA non-coding upstream 27035 5485478 ~ 5485721 (+)
G220844 NA non-coding upstream 28630 5483505 ~ 5484126 (+)
G220830 NA non-coding upstream 79546 5432944 ~ 5433210 (+)
G220861 NA non-coding downstream 4072 5521857 ~ 5522786 (+)
G220889 NA non-coding downstream 53673 5571458 ~ 5571737 (+)
G220922 NA non-coding downstream 158679 5676464 ~ 5676963 (+)
G220930 NA non-coding downstream 221794 5739579 ~ 5740171 (+)
G220916 NA non-coding downstream 223273 5741058 ~ 5744465 (+)
G219803 NA other upstream 460723 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 1137426 4372658 ~ 4393677 (+)
G218981 NA other upstream 2265883 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 3446673 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 4788052 637590 ~ 720669 (+)
CI01000051_06825895_06830637 NA other downstream 1308014 6825895 ~ 6830637 (+)
G221319 NA other downstream 1824256 7342041 ~ 7342546 (+)
G221386 NA other downstream 1891738 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 2587858 8209722 ~ 8214696 (+)
G222727 NA other downstream 2825157 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017921 zfp36l1b coding NC_007131.7 CM002904.2 9575374 ~ 9580446 (-)