CI01000051_05657394_05672861 (SYT14B, SYT14)


Basic Information

Item Value
gene id CI01000051_05657394_05672861
gene name SYT14B, SYT14
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5657394 ~ 5674202 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_05657394_05672861.mRNA
GTGGGGGGCGGAGCTGTGGTGTTCATGAACTCATCTGCGCTAGACGAGTATCTCCTGAACTGCTAGGTGTCCTGTCCTCCATTGCTTTCTTCATGGCCGTGATCGCTCTGTTTTTTCTTTACCTCAGCAGCAAGCTGTCAGTGGAGAGCCCAAGCAGTGATCTGCCACGTTTTGAAGGTTTTAACAAGGACTTGCAAGTGAGTGACGTCACCTACACTGTCAGTGACCAGCTAACGGAGCAGGTCAATACAATCATCAATAAAGTGCAGACTGAAGAGGATGAGAAAAAGGAGGCTGAAGGGTCTTCTGATGAAGTCCAAAAGGAGAGGAGAAACAGCAAGCTGAAGCGGCAGGAGACAGAATCTAATGCTGCAGACACTGATGGAGAAGGTCGAAAGAGCCGAAAATCAAAAAAGAACTCTATGTGGACTATTGAAGTAGATGAAGAGGAAATAAAGAGAGAGAAAGAAAGACAAGAGGAAGCGAGAAAAGCTGAGGAGGATGAGTGGGAGTGGTGTTACGCCCCCTCTAAAGGATGGTATCGTAAAAGGAGGGACCCAAACCAGCCACAAAACTCATCTCAGAGCACAGACAACCAGAAAGAGAACAGTGACCAAGCTTCACAAAAGGAAGAGTCTGCCGCTCAGGAAGAGAGTGCCTCCTTGTCCAGTAAACACAAAAATGAAGGTGACAACCACAACGAAAATGCTAATGGGATGCACCCAAATGATAGTCTGGAAGAGCAGGACTCTCATGAAATGTCTGGTGATCCTGTTACATCAGCATCAAAGTATGAAAAGAATGGAGAGCACAGTAGTGTTGAGGAAGATGATAATTCTGAAAGATGTAAGAAAACGACACAATCTAAAGGCAGAAGAAAAGATCGAAATGAAGAAGATGAAGACGAAGCATCATGTGAAGAAGGTAAAACATCAAAACAAAAGAAGAAAGGAAAAGTTTATAGTGATGAAGAACAGGAGGAGGGCACTCAGGACTCAAAGTCAAAGAGCTCAAAATCAAAGGCAAAGAAGGACAAAGAGGGTAAAGATGGGGGTTGTCCAGATAAAGGATCATCTGAGAGTGAGGACGAAACACCAAAAAGACACAAAGACTCATCCTCTCACCAGCAGAGAAGTGGGTGGAGAAACAGGGATGCTGAGAATGAGGATTGCAGCAGTGAAGCTTCAGCTGAGCAGGGTAAAAGAAAAAAAGGTTCAAGTTCCCTGAATGAACTTCAGCCTCCACCATACCGGGACAAAGACGATCTCAAGTGTGGCTCAAGGGGCCGCAGTGATTCGGCAGAGGGCAGTGGAAGTGAGGGCAGTGAAGACCCTGAGGACACAGAGAGTTACCTGAATAAGGGCTATGAAGAGGACGCACCCAGCGACAGCACAGCCGTTTTGGGCCCGGAGGATAGCTTAATCCCACCACTTCCAGAAACATACGAACCAGAGGGATTGGGGAAATATGGCACACTGGATGTGGCCTTCGAATATGACCCTGGTGAACAACGGCTTGCGGTGACAGTGACCGCTGCCACAGATATTCCAACACTTAAGAGCACAGGGAACATTTCCTGGCAGGTCCACCTGGTTTTACTGCCCACCAAGAAGCAGAGAGCCAAGACAGGTGTGCAGAAGGGACCCTGTCCCGTCTTCACAGAAACATTTCGGTTCTCATGTGTGGAGCAGGAAGCCTTGGGGGACTATGCAGTCCGGTTCCGTCTGTACAGTGTGCGGCGCATGAAAAAAGAGAAAGTCCTAGGGGAGAAGGTGTTCTACTTAACCAAACTCAATATGCAGGGCAAGCTCGCTCTGCCTGTTACACTGGAGCCTGGCACCACAGTTCCTGTGAGCAATGTTTGTGTGCATGCAGTTTACCATAGCCAATCAGATTTCAGAGTCATAACAATCCATTTTATAATGCTTCTGCTGGGTCTTCTCTACAACGCCACCACAGGCAGACTGTCCGCCGAGGTTATTAAAGGCAGCCATTTTAAAAACTCTGCCACCGATAAACTGCCCATTGGCCTGTTTTGTTGTGTAAAACACTTCATTAGTGGGCAACTGTATGTCATGAGAGACACTTATGTGAAGCTAACAATGCTGGACTCTAAAGGGAAAGAGATGTCCAAATGCAAGACCTCAGTCTGCCGTGGCCAGCCGAACCCAACCTACAAAGAGACATTTGTCTTCCAGGTGGCACTATTCCAGCTATCTGAGGTCACCCTGCAGGTGTCGGTGTACAGTCGGCGGAGCAGCATGAAGAGGAGAGAGCGGGTGGGTTGGGTTGCTCTGGGCCTCAACAGCACCACAGAGGAACAAGAGGAGCACTGGACCCAAATGAAAGAGTCAGAGGGACAGCAGGTCTGCCAGTGGCACACGCTCCTTGATCCATAGGGGGAGCAGTGAAACAATGTAATTTGGTTTTTGGCCATCTGTTCAGTACAGGTGTGTCCAGTCCTGCTCCTGGAGGGCCACTGTCCAGCAAAGTTTACCTTCAACCCCAATGAAACACACCTGAACCAGCTAATCATGGTCTTACTAGACATTTTAGAAACTTCCAGGCAGGTGTGTTGAGGCAAGTTGGAGCTAAACCTTGGACACCCCTGACTTTAGTAGGAGTTAGTATGAGTAAAAATTAAAGGGTTCACACTTAATTAAACATTAAATCCTAATTTATTCCTTCATGTCGCTCCAAACCCCAGTTTCTTCCATGGAACACAAAGGGAGAAATTTTAAAGAATGTTCATTCTCTTTCAATTTAAGCACTTTGGAACTTTTCAAACTTTAAAAAGGACACTATGTGTATAAAAGTAATATGACACCTGGAATGATCAGATCATTGAGTCAGCGAGTTCATGAAATAATCATTCAGTTGATGTCAAGATTATCAATGAATAATAACTTAAATTGCAATCTGTTCATCACATAAAGCTATCTTTGGGCTTCAGAAGACTGTTAATTTGGGGAAAAAAATAATTTGAAGTACTATTTTTGGAGTTGGACAGGCCTTATTTAGGCAATTTGGAATTTGGGTTTGGAATGGCATGGACGTGAGTAAATTATGACAGAATGTTTGATTTTTGAGTGAACTATTTCGAAAGAAGTAGGTGTAAAGTCGCAGTTACATTAGCAAAACATCAGCAAAATTGCGCGGGCAAAGTAGTTCTATTGTTCATCGTCAATGCATGAAGCACTGCTTAGTAGTCACTTCTAAAAAAAGCAGCTTTATATTGGTAAACGCGGCAAATCTGCATCCAATGCAAAAATATGAATCCAATGTGGGGAATTCGATTCATGTGCTCTTCAAGCTAAATTCCCAATCGCGTTGATTACTACATTTCGCCCGTGGAATTTCTTCTAAAGGTAAATGCGACCATACCTTAATTTGAACTGTACAGGACTCCTCCATGTTGGAGGTGCTGTTTACCTCTTAGTGACAGACTGTTTTCCTCAGGATAGCAGTAATGGAGCTGCTGTTTTTTGCAGTGTTGAGAAAAGTGACGGACTGAAAAAAGACGCCTTATGAATAACTATACAGAACTGACCAACTGCCATTGGCACTGCCATCTGTACCAATTGTTTATTCACATCAGAGCATAACTACAACTGTACTGTTGACAGTTGCATAAGCATTCAAACAACTTGAGGTTTTGCCTTTTTACTTGACTTGCAAATATGCAAATACAAAATATGCACTGCATGGTAACAGCTAAAGCATCAAGAGAAACATTCATA

Function

symbol description
syt14b Predicted to be located in membrane. Predicted to be integral component of membrane.
syt14 Predicted to enable identical protein binding activity and phospholipid binding activity. Predicted to be integral component of membrane. Implicated in autosomal recessive spinocerebellar ataxia 11.

GO:

id name namespace
GO:0006906 vesicle fusion biological_process

KEGG:

id description
K19328 SYT14_16; synaptotagmin-14/16

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_05657394_05672861.mRNA True 3740 mRNA 0.45 9 5657394 5674202

Neighbor

gene id symbol gene type direction distance location
CI01000051_05588671_05593438 RDH14B coding upstream 63417 5588292 ~ 5593977 (+)
CI01000051_05579061_05584087 CRIP2 coding upstream 73307 5579061 ~ 5584087 (+)
CI01000051_05523573_05525861 NA coding upstream 130387 5523362 ~ 5527007 (+)
CI01000051_05514127_05516929 ZFP36L1B, ZFP36L1 coding upstream 139609 5512756 ~ 5517785 (+)
CI01000051_05454570_05480649 NA coding upstream 176459 5454532 ~ 5480935 (+)
CI01000051_05712567_05728993 YLPM1 coding downstream 38365 5712567 ~ 5729691 (+)
CI01000051_05757566_05757955 C12ORF57 coding downstream 83364 5757566 ~ 5758141 (+)
CI01000051_05831209_05933202 DLGAP2 coding downstream 157007 5831209 ~ 5933637 (+)
CI01000051_05935542_05939529 NA coding downstream 261241 5935443 ~ 5939632 (+)
CI01000051_05955881_05966250 NA coding downstream 281215 5955417 ~ 5966425 (+)
G220889 NA non-coding upstream 85657 5571458 ~ 5571737 (+)
G220861 NA non-coding upstream 134608 5521857 ~ 5522786 (+)
G220856 NA non-coding upstream 158735 5498104 ~ 5498659 (+)
G220850 NA non-coding upstream 167107 5490068 ~ 5490287 (+)
G220846 NA non-coding upstream 171673 5485478 ~ 5485721 (+)
G220922 NA non-coding downstream 2262 5676464 ~ 5676963 (+)
G220930 NA non-coding downstream 65377 5739579 ~ 5740171 (+)
G220916 NA non-coding downstream 66856 5741058 ~ 5744465 (+)
G220923 NA non-coding downstream 115326 5789528 ~ 5830106 (+)
G220920 NA non-coding downstream 271388 5945590 ~ 5946344 (+)
G219803 NA other upstream 605361 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 1282064 4372658 ~ 4393677 (+)
G218981 NA other upstream 2410521 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 3591311 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 4932690 637590 ~ 720669 (+)
CI01000051_06825895_06830637 NA other downstream 1151597 6825895 ~ 6830637 (+)
G221319 NA other downstream 1667839 7342041 ~ 7342546 (+)
G221386 NA other downstream 1735321 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 2431441 8209722 ~ 8214696 (+)
G222727 NA other downstream 2668740 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017918 syt14b coding NC_007131.7 CM002904.2 9241794 ~ 9278252 (-)