XLOC_009683 (stx12l)


Basic Information

Item Value
gene id XLOC_009683
gene name stx12l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7626535 ~ 7641367 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019414
TTTCGATTTCTGTGAGAGGAGCAGCGCATCGCCGCCGCATCTGAGCATCACAGTTACAGGTATGCGATTCATTCTCACTCTTTACGTATTGAAACCGTTCGCTTTGTTGACATTCGTGCAAGCATATTTACATAATTTCAGACGTACATAATTAGTCCTTGTTTTATTGCAGCGACAGGCCTGCTGAGCCATTACCGACGTGAAATGTGTTGCGTTGCGTACGCAGTAGCCTAcattttctgtatttgtttcaggTTTATTCATTTACGTGTTTTATCTACTGCTATTTTCAGAAATGTGTAACCTGTACATAAAATAAGtcgtttatttatatttaatgcgCGAACACAGTTAACCTAAAGTGAATGTGATTTATGGCATCTGATCATGCAGCTGTTGTTTTTCAGTCATCATGTCTTACGGAATGATGGACAGCAGCCACTCACAGTCACAGCCGAGAGATTTCAACAACCTCACGCAGACATGCAGCTCAAACATCCAGAAAATCACACAAAACACTGGCCAAATCAAGAGCATGCTGTTCCAACTTGGCACGAGACCAGACACACCTGAACTTCAGGACAGACTCCAGCAAGTGCAGCACTACACAAACCAGTTAGCAAAAGAGACCAACAGACACCTGAAAGACCTGGGCACTTTACCACAGCCACAGTCCCCTTCAGAACAGCGTCAGCAGAGGATTCAGAAAGACCGGCTGATGAATGACTTCTCAGCTGCTCTCAACAATTTCCAAGTGGTCCAACGGCGAGCCGCAGAGAGGGAGCGGGAATCAGTTGCGAGGGCACGAGCTGGATCCAGATTCCAGGTGGATGAGCTCAATCAAGATGAGCAGCTTGTGACATTTGAAAAgaATGAAGGCTGGAGAATGCAGACAGAAGAGGAGCCTGTCACAGAAGAGGACCTTGAGCTTATTAAAGAAAGAGAGACCAATATCCGTCAGCTGGAGTCAGACATTATGGATGTGAATCAAATCTTCAAGGACCTTGCTGTTATGATCCACGACCAGGGTGACATGATAGATAGCATTGAAGCCAATGTAGAGAGTGCAGAGGTGCATGTGGAACGAGGGGCCGAACAGCTCCAGCATGCTGCATATTACCAGagAAAGTCCCGCAAGAGGATGTGCATTCTGGCTCTTGTCCTGTCTCTAGTGGCCACCATCTTTGCCATAATTATTTGGCAAGCAATCAGATAA
>TCONS_00019413
TTTCGATTTCTGTGAGAGGAGCAGCGCATCGCCGCCGCATCTGAGCATCACAGTTACAGTCATCATGTCTTACGGAATGATGGACAGCAGCCACTCACAGTCACAGCCGAGAGATTTCAACAACCTCACGCAGACATGCAGCTCAAACATCCAGAAAATCACACAAAACACTGGCCAAATCAAGAGCATGCTGTTCCAACTTGGCACGAGACCAGACACACCTGAACTTCAGGACAGACTCCAGCAAGTGCAGCACTACACAAACCAGTTAGCAAAAGAGACCAACAGACACCTGAAAGACCTGGGCACTTTACCACAGCCACAGTCCCCTTCAGAACAGCGTCAGCAGAGGATTCAGAAAGACCGGCTGATGAATGACTTCTCAGCTGCTCTCAACAATTTCCAAGTGGTCCAACGGCGAGCCGCAGAGAGGGAGCGGGAATCAGTTGCGAGGGCACGAGCTGGATCCAGATTCCAGGTGGATGAGCTCAATCAAGATGAGCAGCTTGTGACATTTGAAAAgaATGAAGGCTGGAGAATGCAGACAGAAGAGGAGCCTGTCACAGAAGAGGACCTTGAGCTTATTAAAGAAAGAGAGACCAATATCCGTCAGCTGGAGTCAGACATTATGGATGTGAATCAAATCTTCAAGGACCTTGCTGTTATGATCCACGACCAGGGTGACATGATAGATAGCATTGAAGCCAATGTAGAGAGTGCAGAGGTGCATGTGGAACGAGGGGCCGAACAGCTCCAGCATGCTGCATATTACCAGagAAAGTCCCGCAAGAGGATGTGCATTCTGGCTCTTGTCCTGTCTCTAGTGGCCACCATCTTTGCCATAATTATTTGGCAAGCAATCAGATAA
>TCONS_00019415
TGAGAGGAGCAGCGCATCGCCGCCGCATCTGAGCATCACATCATCATGTCTTACGGAATGATGGACAGCAGCCACTCACAGTCACAGCCGAGAGATTTCAACAACCTCACGCAGACATGCAGCTCAAACATCCAGAAAATCACACAAAACACTGGCCAAATCAAGAGCATGCTGTTCCAACTTGGCACGAGACCAGACACACCTGAACTTCAGGACAGACTCCAGCAAGTGCAGCACTACACAAACCAGTTAGCAAAAGAGACCAACAGACACCTGAAAGACCTGGGCACTTTACCACAGCCACAGTCCCCTTCAGAACAGCGTCAGCAGAGGATTCAGAAAGACCGGCTGATGAATGACTTCTCAGCTGCTCTCAACAATTTCCAAGTGGTCCAACGGCGAGCCGCAGAGAGGGAGCGGGAATCAGTTGCGAGGGCACGAGCTGGATCCAGATTCCAGGTGGATGAGCTCAATCAAGATGAGCAGCTTGTGACATTTGAAAAgaATGAAGGCTGGAGAATGCAGACAGAAGAGGAGCCTGTCACAGAAGAGGACCTTGAGCTTATTAAAGAAAGAGAGACCAATATCCGTCAGCTGGAGTCAGACATTATGGATGTGAATCAAATCTTCAAGGACCTTGCTGTTATGATCCACGACCAGGGTGACATGATAGATAGCATTGAAGCCAATGTAGAGAGTGCAGAGGTGCATGTGGAACGAGGGGCCGAACAGCTCCAGCATGCTGCATATTACCAGagAAAGTCCCGCAAGAGGATGTGCATTCTGGCTCTTGTCCTGTCTCTAGTGGCCACCATCTTTGCCATAATTATTTGGCAAGCAATCAGATAAGATGAGAGCAGAATCCGACCAACGCTGAGGATCCAACTGCAGTGTGAGTGAATgacgtttatgtgtgtgtttactgtgtgtgtgtgcatgtgcaggcACATATTTAAGACAAATGAACTTGAATTTCTGTAGGAATGGCTCATAAAATGTGAAAAGTAATGTCTTTTTGACCAATATTATCTCTTCTTATCTGTGCCATTTCTGAAGCATCTCgattgcactttattttaaaatattagaaGGGTACTTGTAGTGTTCTTACTTAAAGGTCCCCTGAAGTGCCTTGACATGCGTAAAGCTAAACATTCAATAGTGATGGGTCATTcttgaatgattcattcattttgaacaaatcttttatgTGACTCGAGAACAAGGAATCCTCTtaagctgtgttcacaccagacgcggaacgcgtggataaatcgTGCAATTCGCACGTAAATAGATGCGTCAACATTTGAGTTTACTAGCTTCAATTATGCATCAAAATCTGCTTCACTGGACGCGATAACACTTAATATTTGGCCCTACCCCTAAATCCAGCCCTTACATGCAATCTGTgtcaaattttaaatgtgaaaaaagtattatttttattcatttgaattatgaggacacatgCCATGTGCTCATAAATCAACTTAATGTTATAATACCAATGTCATATCCATATCATCCCCACTCATAAACCActaaaaccagtacacacacacataggtttGGGTTGCTTACGAGGACAATACATcgacataatgtattttatacagtaaaaacagccTACGACCCCTAAACTCTCACAGGAAACCTCTGgcaaattttaaatgcaaagaagcttaaatcttatttttaaccatttggattatgaggacacaagccatgtgctcataAATCAACTTAGTGTTATAATACCAATGTCATATACATCTTATTAATCAGTCATAAACCCCTAAAACCAGTAAACATGCGCACATTAGTTTTGATGGTTTACGAGGACTCCCCACAATGGTTATGAATTTTATACTGTTAAAACGCATACGGCccccaaacccaaccgtcacaggaaacctgtggcaaattttaaatgtaaaagcttaaatatgattttaaagcaTTTACATTATGAGGACACAAGCCATGTACCACTAAAACCGATACATACACAATGGTTTGGTGGTTTACAAGCACTCTCCACagctgtaatgtattttatactgtaaaaacacttAATATTTGGCCCTAAATCCAACCCTTACATGAAATCTGTGACAAATTTCGAATGTGAAAAGACCACATTAAGTATGATTTGTAAGAGTTTTGTATTACAAGGACACACGGCATGTCCTCGTAAATCAACTCAGTGTTGTAATACCAACATTCTATACACATTTGCGTCCTCGTAAACCACAAAAAAAGTATAGGTTATTATTCTCTTATGAATGTTTGCTAATGTGAATACATGACCAATTTGAGCCACAGAGAGCATtagattggtcagaagatttgataagaaactAAAGCATGaggtaaattaataaaaattgatCACTTATTTTGGCGGCAATGACGAAAGGCAGGTTTTGAATGTTTGTATCTTGTGAACGATGCTTTCGAATTGTGGTGCTGGAGGCGAATAATACATGGACAGCGAGGATCACAAACAAAACGATTCTGGAGCGTGTCAAACAAAATGTATCGCTAGAGGGCAAAATCACCAAGCAGCGTCTCTCGTTCTTTGGTCATATCATGCGAGCCAACTCCATGGAAACAGCTTTAATGCTTTGAGCAGTCAGTGGATCGAGAAGAAGAGGGCGTCAGAGAACACGATGGCTGGACACAATCAAGACTGAAGTGAACTTGAAAATGGAACAACTGAAAGAAGCATACAGAAATAGGAAAGCGTGGCAAATTACGATCCATAAAGTGGCCGAAAGTCGGCGTCGACTGTTTGGCTAATCATCATCATCTTGTGAACatgaattttgtcattgttttgaagcacactagcttatGGATAATCTTAAAACTGACATACGGATACTAACACCCCtcaaaaacaaactttaattttgaTTTTAGGGGATCTTTAAGAAAGTACTGGGTTTGGGTTAAGGTTAGGTTCAGGGGTAGGTTTATTAGTTATTACCGAGTTTATGTGTTGTCTATTATAAGTAGACGTACATGAAAACAGGactaaaataaagtgctaccagCATTTAATCAGCTTAGATCTTACAGAGGCATACTGGCACTCTAAACAGTGTACTTAGTTTATTAATTTGGATCAGATCCCAATGAGCCATTCATGCAGAAAAGCAATCACGTCAAAGTGTTCTCATTAAATCTGTACTTACTGTATGTGTTAAACATTGCTAGTAAGAGAATAGTCTCCTCTATTAAATGTGTGTCTATTAAAAAATCTGGAGCATAAACAGCACAACAtatgaaacacaaacacaagatGAAGATCGCAAGCCACTTGCatgaatgtaattttattttacaaattgtttaatgttttgtttttagcttgGTCTCGGTTAATTTTTCATTTGAAATTATGCAAAACAATAATACttataaataatacaatgaaaatgtattcctTAAAATGATTTCAATGAAacagttttattgttgtgtaTGTCTAATGCACAGTGCTCTGATTCTTCTGTAAATGTATTTCTTAGTAGTACATAATAAACAAGAAACATGTTTTAAtgtattgttcaattattatctgcaaatgtatttttatttgaccAGAAACAAGTTACTCATTagtttgtcagattttattttcttttttttttgagttattaaaatttattaattaattaatacaatgaattaaaatgtaaactgCCCAAAAGTAAAGCTATACTACGTT

Function

symbol description
stx12l Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynaptic recycling endosome and synaptic vesicle. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human STX12 (syntaxin 12).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006906 vesicle fusion biological_process
GO:0048278 vesicle docking biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0098837 postsynaptic recycling endosome cellular_component
GO:0012505 endomembrane system cellular_component
GO:0030285 integral component of synaptic vesicle membrane cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110715-1 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynaptic recycling endosome and synaptic vesicle. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human STX12 (syntaxin 12).

Ensembl:

ensembl_id ENSDARG00000044605

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019414 False 1216 mRNA 0.46 9 7626535 7638477
TCONS_00019413 False 868 mRNA 0.49 10 7626535 7638477
TCONS_00019415 True 3739 mRNA 0.38 10 7626547 7641367

Neighbor

gene id symbol gene type direction distance location
XLOC_009682 CT574585.2 coding upstream 60440 7564527 ~ 7566095 (+)
XLOC_009681 NA coding upstream 111028 7514850 ~ 7515507 (+)
XLOC_009680 atg5 coding upstream 210003 7380463 ~ 7416532 (+)
XLOC_009678 CU466278.2 coding upstream 331582 7227584 ~ 7294953 (+)
XLOC_009679 sri coding upstream 366190 7242610 ~ 7260345 (+)
XLOC_009684 popdc3 coding downstream 12538 7653905 ~ 7658707 (+)
XLOC_009685 bves coding downstream 21242 7662609 ~ 7681144 (+)
XLOC_009686 ccr11.1 coding downstream 56646 7698013 ~ 7699207 (+)
XLOC_009687 cnot10 coding downstream 62167 7703534 ~ 7730836 (+)
XLOC_009688 NA coding downstream 151354 7792721 ~ 7793768 (+)
XLOC_009677 NA non-coding upstream 394355 7226676 ~ 7232180 (+)
XLOC_009675 NA non-coding upstream 507967 7118147 ~ 7118568 (+)
XLOC_009691 NA non-coding downstream 714112 8355479 ~ 8372570 (+)
XLOC_009696 NA non-coding downstream 1323522 8964889 ~ 8965839 (+)
XLOC_009697 NA non-coding downstream 1324842 8966209 ~ 8966926 (+)
XLOC_009699 CR394537.2 non-coding downstream 1595765 9237132 ~ 9237246 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000065_03015397_03024204 NA coding CI01000065 null 3014852 ~ 3024204 (-)