CI01000051_05955881_05966250


Basic Information

Item Value
gene id CI01000051_05955881_05966250
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5955417 ~ 5966425 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_05955881_05966250.mRNA
ATATAAAATCAACGAAAGTTTACCTACCCACGCGGCTTCAAATCATTTGTGCTTTTCCGCACTGATGTCTTAAAAAGCTCAAAACGCAAAGGAAACGGTCACTTAATTAATAATAGATTATCACTATGGGTACAAAGAGCCAACCGTTCCCCGTTAACCTTAAAATCTAGGTTCACACCAAGTTGGGCGGAGAGACTGTGCGAGGTGTTTGAGTTCCACACCTGCGCGCAATACTGTGCAATCAGATGGAACGCGCTCGAGACACAGTTCATTAATTACCTTCCGGTGAGGTCGCGCGTTTGTGTAGAAAACACAGTTGTTGGTTTGTAAAATACATTAACAAAGATTTCAAATGATGGGATGCTTTGAAATAGGGTATGTTTTAGGCTATGGAAAATAAGTGTGTTTGAATTCATCAAGAGATATGCTAATTTATTTATGATGCTTTTAGGGCTTTATGGCTTATGGTCACTATAATAAGCGTTGATGCAGATACCTCTGCAGGTGGAATTCAAGCAGAATGTCTTGGAAATAGGGTGCAGTTTACCCTTCCTAGTTCTTTAAATGTAGGAAGTCCTTTAGAGGTTTATGCAGTCAATAACACACAGACAGTCCTTCTCACACCTCACCTGGCGGCTCAGTGTGGCTACACACAGAAATCGGATCCTTGGGGAAATACGATAGTGTCAGCTTCCCTAAACAATTGTTTTGCAGAGAACAAGGTATCTGTAAGGAATGCAATACCAGAAATCAAGAAAGCACCAGTGAAAGAGTGGCCCACAGTTATACCTAACTTACAACTCTGGAAGATCTTACTCTACACCCCTGAAGAGAAGGCTTTTGATAAAGAGACCCTCCAAGAGATGGGCTACAGTGTTTACAGTTCTCCAACAAGGCTTGTCTTACGAAGCCCATACAACATGGCTGAAACCTTTGTCCAACATGTTGACGATGTTGATATGATGGTGTTCAAATCAGTGGTCTTGTTCAGAGACCGCTGGATGTTGGCTATAGTAGAGTCGGCAGCTGCCTGTCCAACCAAAGTTGAAATCCTGGAGGTGCACATGGGCATTAATGGTAGAAGGCTCACGCCTGAAGAGATGAGTAGCCGTAACTTCAGCATGATGTTCACAGAGTCCCATGTAGTTGTTGAGATTCCTATTGGGGCTCCTGGTGGTTATTACAAGAGTCATGCACTTGAGAACCAGAACCATATCAGTTACACCATAGAACCCATGCTTGAGCTACTGTGGATGGAGGGTCTGGATAAGACCACATATAAGGTGTTATTCCCCATCACCACCCCTTTAACACCATGGCCCCCCCAAATCACAGACTACACTCAACCCCAGAAGAAGGCATTTGATGTATTGCTGGGTTACTTCCTACCTGATGTGAAGCTGCTGAATATCACTTTTGGCTCTGAATTGCTCACTGTCTCCGAGGTCATTATTAAAGGCATTGTCCTGCAAGAGCAAAGCTTCCCCAATGGCACCAAAGCCTTTACTCTTCAGGTTCCCTTCTCTGAACCTCATGTCCAAGTAAAGACTCTTCACCCTGATAGAAGAACCTACTCTCTTCCTCTTGTCTTTGGTTTTGTCATCTTGCCTGAACAGGCATCATTTTCATACTCCACAGAACTAGAAGTTTCTTTAAATGACACTGTCCATCCAAATGCAGGGGGAAGATGTAATCAGGACATCTTCAACATTTTTGTCCAGTATGGAAGCACCCCAAGATCCCAATTAAAGATCAAACTGGGACAAGTGGAGATTAATGATGAAGTTTTACAGCAATATGAACACCATTCAAATGAAACCCATTTCAAAATTGTTGTGCCATTCCTGGCCCCACTTGTGGCTATAGAGTCTGTACGGTTGACCGGAGTCGTGGGAAGAATTGATGTGGAAATTTACGATACATTAAATGACTGGCATGTCAAAGACTTCTCCCTTGCCTGCACCTTTTTTGTAAAAATGTCAGAGTGTTTTTCTAATGGAACGATTACTGTGGTGGTTCCCAAATTGGAATCTGTAACACGCCTGGTTCCCGGTAAACTCTCTCTAAAAGACCCAACCTGCAAACCCTACTACAATGAAGACCACTTTGCTTATTTTCGCTTTGATGTCACCACTTGTGGAACCACACGAAAGTTTGTTGGGGACACCATCAAATATGAGAATGAAGTCACCTGGAAGAGAGATGAACTTTTGCCTCAGATCTCCGAATTATGGCCTGAGCCAGAATACAGGTTCTCTGTGTCCTGCATTTATACCGCAAATGCTACCCAGAGCATGATCTTCCACGCTGTCTCGCACCTTAAAGAGCCAGAGGCAGATGTTGGAAAGGGTGAACTTACTGTTTCCCTGAGGCTCTCTCAGGATATGGTCTACAGACTTTTCTATCATGATGGTGACTATCCAGTTTTAAAGTTTCTGAAACAGCCTCTGTATTTTGAGGTGGGTATGGATCACTCCAGGGACTCCAGGTTAGCAGTACGCCTGGAAAACTGTTGGGCAACACTCACCAAGGACAGAGAATCCAAACCTAAATGGGATTTAATAGTTGATGGATGTCCAAATCATAAAGACCCTGAACAGACCGTCTTCCATCCTGTAATTGAAGATGATCGAGTTGACATCCCGGATCACTTCAAGAGATTTGAGGTTAAAACATTTACTTTCAAAGAGGATGATGGGAGCTCTAAAAATGAGGGTGCCGCTGTGGCCAGACGTGTATTTGTCCACTGTGACGTTGTCATTTGTCATGTTGGAAACACTGCTGATGGACATTGTTACAAACAGTGTGGGGCGACTCAGAATTCGATCAGGAGCAGCTTAAATCGAGTTCGCAGAAGTTCAAGCTTTTCAGAGGAAGCCCCGCAACATGTGTCTATAGGCCCCATTCTGTTGATATGAACATGTAATTGCATTTAGTTTTCCCATTTATCTCAGGAAATGCACTAATTCTGAAGGTATCAACACAAGGAGACTTCTGATTTTGAACACCACTTGGTGTAACACTGAACTCAAAACTGATGCAGATGATGAGGTGAACCTGTGGACGTGTTCTGTGATAAACCATTTTAACCCA

Function

NR:

description
Si:dkeyp-50f7.2 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_05955881_05966250.mRNA True 3093 mRNA 0.43 19 5955417 5966425

Neighbor

gene id symbol gene type direction distance location
CI01000051_05935542_05939529 NA coding upstream 15785 5935443 ~ 5939632 (+)
CI01000051_05831209_05933202 DLGAP2 coding upstream 21780 5831209 ~ 5933637 (+)
CI01000051_05757566_05757955 C12ORF57 coding upstream 197276 5757566 ~ 5758141 (+)
CI01000051_05712567_05728993 YLPM1 coding upstream 225726 5712567 ~ 5729691 (+)
CI01000051_05657394_05672861 SYT14B, SYT14 coding upstream 281215 5657394 ~ 5674202 (+)
CI01000051_05969849_05970699 NA coding downstream 3424 5969849 ~ 5971469 (+)
CI01000051_05996289_06007664 RHAG coding downstream 29570 5995995 ~ 6008558 (+)
CI01000051_06113450_06128623 TAGAPB coding downstream 147025 6113450 ~ 6129084 (+)
CI01000051_06136031_06140543 RSPH3 coding downstream 169606 6136031 ~ 6140633 (+)
CI01000051_06155906_06164505 EZRB, RDX, EZR coding downstream 189481 6155906 ~ 6164505 (+)
G220920 NA non-coding upstream 9073 5945590 ~ 5946344 (+)
G220923 NA non-coding upstream 125311 5789528 ~ 5830106 (+)
G220916 NA non-coding upstream 210952 5741058 ~ 5744465 (+)
G220930 NA non-coding upstream 215246 5739579 ~ 5740171 (+)
G220922 NA non-coding upstream 278454 5676464 ~ 5676963 (+)
G220983 NA non-coding downstream 23381 5989806 ~ 5990114 (+)
G220967 NA non-coding downstream 48748 6015173 ~ 6016182 (+)
G220991 NA non-coding downstream 52896 6019321 ~ 6019978 (+)
G220993 NA non-coding downstream 54478 6020903 ~ 6021164 (+)
G220992 NA non-coding downstream 56522 6022947 ~ 6023186 (+)
G219803 NA other upstream 903384 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 1580087 4372658 ~ 4393677 (+)
G218981 NA other upstream 2708544 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 3889334 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 5230713 637590 ~ 720669 (+)
CI01000051_06825895_06830637 NA other downstream 859374 6825895 ~ 6830637 (+)
G221319 NA other downstream 1375616 7342041 ~ 7342546 (+)
G221386 NA other downstream 1443098 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 2139218 8209722 ~ 8214696 (+)
G222727 NA other downstream 2376517 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017965 zpax2 coding NC_007131.7 CM002904.2 14096858 ~ 14114151 (-)