XLOC_009684 (popdc3)


Basic Information

Item Value
gene id XLOC_009684
gene name popdc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7653905 ~ 7658707 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019416
CTTCACAGGACCTTCAAGACGATCATATCTCAACACAGGAATACACAGGGCGATTATTAACGCAGCATTCGTTCACATATACGATTCTCACTGTTAAGATTATTCATAATCCACAATGGATCTTTTACCTGAGAATAACGTGACAGAAGAGGTTCTGGAATACCCGGTATGCTCGGAATGGAAGGAACATCCCGAAGGATCGGTATTTCATCTCGCGCACATTTTGCTGGTTTTGGGATTTATGGGAGGCAGTGGCTTTTATGGATTACTCTACATGTTCTGCTTTTTAACACTGGGCTTTTTCTGTTACTCGATCTGGGCTTGGTCTGACCCCTGCACGACCGACTCGTTTTCGTGGACTTTTGCGCTTTTCGCCTTCTGTTTGGGACAACTTATCCACGTGGCGTACCGATTACGAAGCGTCACTTTTGAAAAGGAGTTCCAGGATCTGTACGAATGCTTATTCAAAAAGCTGGGGGTGTCCTTAATACACTTCGGGAAAATCGTGGAGTCATGTGAAGGCGATGTGCACACTATTGAGAAAGACCACTTCTTCGCCATGGAGGGTAAAACGCCTATTGACAAACTGTCAGTTCTTGTTTCAGGCAGGATACGAGTGACGGTGAACGGGGAGTTTTTGCACTTCATCTATCCATTTCAGTTCCTGGACTCTCCAGAATGGGATTCCCTCAGACCCTCAGAAGAAGGTTTTTTTcagGTTACATTACGCGCGGATATCCGTTGTCGGTACGTGGCGTGGCGGAGGAAGAAACTGTACCTGCTGTTCGCGCAGCACCGCTACATCGCCAAGATCTTCGCGCTGCTGGTGCGCAATGACATCGCGGAGAAACTCTTCTCCCTGAACGACAAGGCTTTCGACATACGCGGGTTCCGCTATGATCTCCGGTTACCGAGCTTCTGTAACGGGCCGGGCCCAGAATTAGCAAACACAAATGAATCTCGGCCAGTGCTGGGACAGAGTGAAACCAAACCGGCATAGAGAGACTCGTGAAAAGCGCACACTCGAATGTCTTAAATGATTGTGGTCCTAACTTTTTATTCTCCATTTTTTATATATCTTGAATCTGCGTGAGAATGTAtgagtgcttcttttttttttttttttttttttgtatattattgtatttaattttagttttcacAGTTGGGACCCTGGACCACTAAACCAGTATTACGTTGCACaggtaaataaaaattattagagtctttcatacaaaataaaacattagaaTAGTAAGGCATTGATACAAATGCTtctttaaatacagttgaagtcagaattattagcccccctttgattttcttcttttttttacattttccaaaTTACAGTAtatctaacagagcaaggaaattttcacagtatgtctgataatatttttttcttctggagaaagtcttatttgttttatttcggctagaataaaagtagttttgaattttttaaaaaccatttttctgacaaaattattagcccctttaagctatattttttggttaaccacagaacaaaccatcgttatacaataacttgcctaattacactaacctgcctagttaacctaattaacctagttaagcctttaaatgtcactttaagctgtataaaagtgtcttgaaaaatatctagtcaaatattatttactgtcatcatggcaaagataaaataatccagttattagaaatatcttctctgttaaacagaaattgggggaaatttaacagggggctaataattctgacttgaactgtatatcaaaatatttttttttattcgtaCGCCCTGCTAAAAACTTTACTTGGACAACTTTAATggtgattttttaaaacatttatgtttGTTGGACATCACTCAGATTCcagatattaaaataattttctacCCTGTAAAAATTattgatgcttttatttttttagctgaatcaaataaacttttttagtcatctcaacttacatcaatcaaaccgactaaaaatattaatttaaacttagtgtaacttaaaaaaaaattattggtacctgattaacctattaaaataagttaaagcaacataaaacatttgttgtcttgactttttgtccttcgattttttttacagtgtaatagcTACAATATCAATAGAAAGCTTATTCAGCTCTTAGATTATGTACAAAtcttaattttcaaaaaagctgACCCCATATTATTGGTTTTGTTGTCCAGAgccacaatttatttaaaatttccaGTTTGATCAGAATAtggtatttaataaaatattattgcagTGTTTTTCTAGGCATGTACTTGCTATTTGGATGTATGAGAGatcccacatgaaaaaaaatattatagtagtTTGTTTTGTGGTAAGTACTAGTGTTTCTGAACCAACGTATTGTTTATGAAGttttcagcatactgtagtataaaATAGAGAACTGATAAACTGTTATAAATACTATTGTACACTTTATGCTACACTACGGTTAAACtgatgtattgtagtataatatttaattagtaTTGGGTAATGTATGCTACTATTGCTGTATCACCATATTAACAACGTGCAGATTAATTTTTTACTATGGTTAATAAACACTATTTTGTTACTATACATTgctgtagtatttttttcatatggGATTCATATAATTTTTGTGAAACCTTTCCTATTAAAGCACAAATATGTCAGTATATCTACTTTATCCATAAATGATTTCACAAAATAAGAATACATGCTCTACAGAGCTCTGTGCCGATGTGATATTTGACTGTTGCCTGTGTTGTGTTTGCTTTACACACATATTAATTGTTCATCTTAATGTTCATTATTgtatggaataaaataaaaatgataaacaataAA

Function

symbol description
popdc3 Predicted to enable cAMP binding activity. Predicted to be involved in several processes, including heart development; skeletal muscle tissue development; and striated muscle cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in sarcolemma. Used to study muscular dystrophy. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy. Orthologous to human POPDC3 (popeye domain containing 3).

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007507 heart development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0042383 sarcolemma cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030552 cAMP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040624-10 Predicted to enable cAMP binding activity. Predicted to be involved in several processes, including heart development; skeletal muscle tissue development; and striated muscle cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in sarcolemma. Used to study muscular dystrophy. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy. Orthologous to human POPDC3 (popeye domain containing 3).

Ensembl:

ensembl_id ENSDARG00000058551

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019416 True 2873 mRNA 0.35 3 7653905 7658707

Neighbor

gene id symbol gene type direction distance location
XLOC_009683 stx12l coding upstream 12538 7626535 ~ 7641367 (+)
XLOC_009682 CT574585.2 coding upstream 87810 7564527 ~ 7566095 (+)
XLOC_009681 NA coding upstream 138398 7514850 ~ 7515507 (+)
XLOC_009680 atg5 coding upstream 237373 7380463 ~ 7416532 (+)
XLOC_009678 CU466278.2 coding upstream 358952 7227584 ~ 7294953 (+)
XLOC_009685 bves coding downstream 3902 7662609 ~ 7681144 (+)
XLOC_009686 ccr11.1 coding downstream 39306 7698013 ~ 7699207 (+)
XLOC_009687 cnot10 coding downstream 44827 7703534 ~ 7730836 (+)
XLOC_009688 NA coding downstream 134014 7792721 ~ 7793768 (+)
XLOC_009689 ano10a coding downstream 327179 7985886 ~ 8041348 (+)
XLOC_009677 NA non-coding upstream 421725 7226676 ~ 7232180 (+)
XLOC_009675 NA non-coding upstream 535337 7118147 ~ 7118568 (+)
XLOC_009691 NA non-coding downstream 696772 8355479 ~ 8372570 (+)
XLOC_009696 NA non-coding downstream 1306182 8964889 ~ 8965839 (+)
XLOC_009697 NA non-coding downstream 1307502 8966209 ~ 8966926 (+)
XLOC_009699 CR394537.2 non-coding downstream 1578425 9237132 ~ 9237246 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000065_02992054_02993108 POPDC3 coding CI01000065 null 2991815 ~ 2993167 (-)