XLOC_009685 (bves)


Basic Information

Item Value
gene id XLOC_009685
gene name bves
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7662609 ~ 7681144 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019417
CGCAGAGGAGTGGCCGCGTGGTTTGTGCCCATTTTAAGTCAACGCCTGTCATCTGGCCGGAATGcgctcctcacacacacactccggctCTCAGCTCTGCTAAACCTATCTCTTATCTTCTGCATTAACATTCCTCCAGACCGAGCACATTAAAGCTGCTTTCGACAACACCGCAAACTCTCTGGCCATTTCCCAAACAGCTTGACCGCCTCAGAATGTCCAACACAACATCCGCGCTGCCCTCCAGTGTTCCAGCTGTCAGCTTGGATCCAAACGCCACACTATGCCAGGATTGGGAACAGTCTCATCACCTGCTGTTCCACCTGGCCAACCTGAGTCTCGGGCTGGGTTTCCTCATTCCCACCACATTAGCGCTTCATATGATCTTCCTCAGGCTGCTGCTGATGACAGGCTGCTCTTTGTTCATAGCGTGGGCTACGTTATATAGATGCACACTGGATGTTATGGTGTGGAATGTGGTTTTCCTTCTAGTGAACTTCATGCATTTCTTCTTCCTGCTTTATAAACGCAGACCGATTAAGATTGACAGGGAGCTCAAGTCAGTGTACAAGCGCATGTTCGAGCCCCTGCATGTGCGAGAGGCTCTGTTTCAGAGACTCACTGGCCAGTTTTGCACTATCCAGACATTAAAGAAAGGCCAGGTTTATGCAGCAGAAGACAAAACCTCTGTTGACGAGCGCCTCAGCATTCTTCTCAAAGGAAAGATGAAGGTATCGTATCGGGGTCATTTCTTGCATAACATTTACACCAATGCCTTCATCGACTCTCCAGAATTCAGGTCAACTCAGATGAACAGGGGTGAACGCTTTCAGGTGACGATCGCTGCTGAGGAGAACTGCAAGCTGTTGTGCTGGTCCAGAGAACGTCTGACTTATTTCCTGGAGTCAGAGTCTTTTCTGAATGAGGTCTTCAGGTATCTCATTGGCAAAGACATCACCAACAAGCTTTACTCCCTCAACGATCCAACCCTCAGTGACAAGGCTGTAAAGAAAATGGACCGCCAGCCGAGTCTGTGTTCCCAGCTGTCTATGATGCAGATGAGGAACAGCATGGCGAGCACCAGTGACACTGACGACGTGCTCAATCAGATCCTGAGAGGTGGATCAACTGGCTCATCACTTCAGAAAAATCCTCTGACGAAAACATCCACGACTATGAAGCCAATCGAAGAAGGACTGGAAGATGATGTTTTTGAATCCGAGTCCCCCACCACCTCCCAGAATGTTTCAAAGACCaccaaaaaagacatttaaacgtATTTGATCACCTCGCAGTCTTAGCCTTTAGCATTTCACTGCTCATTCGACAGAAACGAATGTGAGATTACACTAGTATAAGTTAAGAGACCCCTTAGGCAGGCAGATTTATCCTTGAAAATATTTTCGGATATCATATGATCGACTGTAGTATTTTCTTGCTTCACATAACAAACAGTTTGATTTTTCCATCATTTCTCTAATGATCAAGTAGAAATATAGCTTATGCTTCCTTGCATGCTCCTGATTTCTCAAGTCCTATTTTCACATGTGATTATGTTCCAGTGTTCTATTATGCGGATTACACCATTTGTGCCTTTGATTTGATCACATAATGTTACTAAGGAATCACTTAGTTTAAGCAATGTGTGTTACATTTGAATTTACTGAATGTCCTATTTAAAGCATTTTGATCTCTTGTAAGTAGTTTATTTTATTCTGTGATTATAAGGATGAGACGTTTGTGTGTTTAAAATCATACAGATACTTGaaatcactttttaaattaaagttttgcATCATGCTGTCTTCGTGCCAACCTGGGTGTTTTCATAAAAACAAAGAACATTTATGATGCAATACTGTctgaaattctttttttttactcacaTCTGGTCATTTTtgtggtacactgtaaaaaatggccgtgatttcaacggtaaaaaactgtaaaaatgctacagtaaaaatccgtaacctggttaacggtatgtttccttaatatatacggcgaataaccgtaaattgactttcccagaatttcCTACATGGCACaacactttttatgcattttgttgacattaatatggatctttttagttgtttccccatcagttatgtacattagagatttatgttacatctaacgttgataaacaatgtttatttcatgactttaattttatgtgtgtgacactgagcaccttctacatgatgatactcttttctgctcgtgggaaaagttgattgtgatgagcattagCTGTTAGGGTGTGCTAACTAGAGATGGggagttcggatcattttactgactcggatctttgagtctcgttcattaagatgaacgaatctttttccgagccatttcgttcatttggttcaatttggcaaaatattattaaaatgtttcgaattgcttccaaacacatctacaactagcccaaaaggttgattgcacgacaaataagtaATAagtagaatataagaaggagaaaataataattcaatgtttacctgctcttttgtctatgaaggtattgttgtctctttgctcagctcacctcttcatgccTTCAAATGTAAGGgattcattcacgttacactgccAGTCACatcaggggcgcccccaaggggtggccaggggtggccacggccacccctgggtaaactctggccacccctgtggccaccccaatatgattttgctattgATATTATTAACTTAAATGTACTTATGTAAATTCTCGATGTttctatagataaataaataacatgcagttATTGTTTGTGCCACTAAGGTAGCTGATTCACTGCACCTCTCTTCCCCAGTAGCGGATTTGGGCAATATGCCAAATGCCAGGGCGGCGTCGCAAGTATCTTGCTGGGGGCGGCACGCGGAGATGGTGCAGCAAAAAACATCCCCTAGTAAAAGCATTGGGATACCATTTACTTTATGCACGTGAGTTAACTTAGAGTggcaatcccagaataaagacattAAGGGCCGTTCGTTCACATCTTTTT
>TCONS_00019419
GGAATGcgctcctcacacacacactccggctCTCAGCTCTGCTAAACCTATCTCTTATCTTCTGCATTAACATTCCTCCAGACCGAGCACATTAAAGCTGCTTTCGACAACACCGCAAACTCTCTGGCCATTTCCCAAACAGCTTGACCGCCTCAGAATGTCCAACACAACATCCGCGCTGCCCTCCAGTGTTCCAGCTGTCAGCTTGGATCCAAACGCCACACTATGCCAGGATTGGGAACAGTCTCATCACCTGCTGTTCCACCTGGCCAACCTGAGTCTCGGGCTGGGTTTCCTCATTCCCACCACATTAGCGCTTCATATGATCTTCCTCAGGCTGCTGCTGATGACAGGCTGCTCTTTGTTCATAGCGTGGGCTACGTTATATAGATGCACACTGGATGTTATGGTGTGGAATGTGGTTTTCCTTCTAGTGAACTTCATGCATTTCTTCTTCCTGCTTTATAAACGCAGACCGATTAAGATTGACAGGGAGCTCAAGTCAGTGTACAAGCGCATGTTCGAGCCCCTGCATGTGCGAGAGGCTCTGTTTCAGAGACTCACTGGCCAGTTTTGCACTATCCAGACATTAAAGAAAGGCCAGGTTTATGCAGCAGAAGACAAAACCTCTGTTGACGAGCGCCTCAGCATTCTTCTCAAAGGAAAGATGAAGGTATCGTATCGGGGTCATTTCTTGCATAACATTTACACCAATGCCTTCATCGACTCTCCAGAATTCAGGTCAACTCAGATGAACAGGGGTGAACGCTTTCAGGTGACGATCGCTGCTGAGGAGAACTGCAAGCTGTTGTGCTGGTCCAGAGAACGTCTGACTTATTTCCTGGAGTCAGAGTCTTTTCTGAATGAGGTCTTCAGGTATCTCATTGGCAAAGACATCACCAACAAGCTTTACTCCCTCAACGATCCAACCCTCAGTGACAAGGCTGTAAAGAAAATGGACCGCCAGCCGAGTCTGTGTTCCCAGCTGTCTATGATGCAGATGAGGAACAGCATGGCGAGCACCAGTGACACTGACGACGTGCTCAATCAGATCCTGAGAGGTGGATCAACTGGCTCATCACTTCCTGTGACCTCAGATCGGGCCTGATGGGGTAGAAAAATCCTCTGACGAAAACATCCACGACTATGAAGCCAATCGAAGAAGGACTGGAAGATGATGTTTTTGAATCCGAGTCCCCCACCACCTCCCAGAATGTTTCAAAGACCaccaaaaaagacatttaaacgtATTTGATCACCTCGCAGTCTTAGCCTTTAGCATTTCACTGCTCATTCGACAGAAACGAATGTGAGATTACACTAGTATAAGTTAAGAGACCCCTTAGGCAGGCAGATTTATCCTTGAAAATATTTTCGGATATCATATGATCGACTGTAGTATTTTCTTGCTTCACATAACAAACAGTTTGATTTTTCCATCATTTCTCTAATGATCAAGTAGAAATATAGCTTATGCTTCCTTGCATGCTCCTGATTTCTCAAGTCCTATTTTCACATGTGATTATGTTCCAGTGTTCTATTATGCGGATTACACCATTTGTGCCTTTGATTTGATCACATAATGTTACTAAGGAATCACTTAGTTTAAGCAATGTGTGTTACATTTGAATTTACTGAATGTCCTATTTAAAGCATTTTGATCTCTTGTAAGTAGTTTATTTTATTCTGTGATTATAAGGATGAGACGTTTGTGTGTTTAAAATCATACAGATACTTGaaatcactttttaaattaaagttttgcATCATGCTGTCTTCGTGCCAACCTGGGTGTTTTCATAAAAACAAAGAACATTTATGATGCAA
>TCONS_00019418
GGAATGcgctcctcacacacacactccggctCTCAGCTCTGCTAAACCTATCTCTTATCTTCTGCATTAACATTCCTCCAGACCGAGCACATTAAAGCTGCTTTCGACAACACCGCTTGACCGCCTCAGAATGTCCAACACAACATCCGCGCTGCCCTCCAGTGTTCCAGCTGTCAGCTTGGATCCAAACGCCACACTATGCCAGGATTGGGAACAGTCTCATCACCTGCTGTTCCACCTGGCCAACCTGAGTCTCGGGCTGGGTTTCCTCATTCCCACCACATTAGCGCTTCATATGATCTTCCTCAGGCTGCTGCTGATGACAGGCTGCTCTTTGTTCATAGCGTGGGCTACGTTATATAGATGCACACTGGATGTTATGGTGTGGAATGTGGTTTTCCTTCTAGTGAACTTCATGCATTTCTTCTTCCTGCTTTATAAACGCAGACCGATTAAGATTGACAGGGAGCTCAAGTCAGTGTACAAGCGCATGTTCGAGCCCCTGCATGTGCGAGAGGCTCTGTTTCAGAGACTCACTGGCCAGTTTTGCACTATCCAGACATTAAAGAAAGGCCAGGTTTATGCAGCAGAAGACAAAACCTCTGTTGACGAGCGCCTCAGCATTCTTCTCAAAGGAAAGATGAAGGTATCGTATCGGGGTCATTTCTTGCATAACATTTACACCAATGCCTTCATCGACTCTCCAGAATTCAGGTCAACTCAGATGAACAGGGGTGAACGCTTTCAGGTGACGATCGCTGCTGAGGAGAACTGCAAGCTGTTGTGCTGGTCCAGAGAACGTCTGACTTATTTCCTGGAGTCAGAGTCTTTTCTGAATGAGGTCTTCAGGTATCTCATTGGCAAAGACATCACCAACAAGCTTTACTCCCTCAACGATCCAACCCTCAGTGACAAGGCTGTAAAGAAAATGGACCGCCAGCCGAGTCTGTGTTCCCAGCTGTCTATGATGCAGATGAGGAACAGCATGGCGAGCACCAGTGACACTGACGACGTGCTCAATCAGATCCTGAGAGGTGGATCAACTGGCTCATCACTTCAGAAAAATCCTCTGACGAAAACATCCACGACTATGAAGCCAATCGAAGAAGGACTGGAAGATGATGTTTTTGAATCCGAGTCCCCCACCACCTCCCAGAATGTTTCAAAGACCaccaaaaaagacatttaaacgtATTTGATCACCTCGCAGTCTTAGCCTTTAGCATTTCACTGCTCATTCGACAGAAACGAATGTGAGATTACACTAGTATAAGTTAAGAGACCCCTTAGGCAGGCAGATTTATCCTTGAAAATATTTTCGGATATCATATGATCGACTGTAGTATTTTCTTGCTTCACATAACAAACAGTTTGATTTTTCCATCATTTCTCTAATGATCAAGTAGAAATATAGCTTATGCTTCCTTGCATGCTCCTGATTTCTCAAGTCCTATTTTCACATGTGATTATGTTCCAGTGTTCTATTATGCGGATTACACCATTTGTGCCTTTGATTTGATCACATAATGTTACTAAGGAATCACTTAGTTTAAGCAATGTGTGTTACATTTGAATTTACTGAATGTCCTATTTAAAGCATTTTGATCTCTTGTAAGTAGTTTATTTTATTCTGTGATTATAAGGATGAGACGTTTGTGTGTTTAAAATCATACAGATACTTGaaatcactttttaaattaaagttttgcATCATGCTGTCTTCGTGCCAACCTGGGTGTTTTCATAAAAACAAAGAACATTTATGATGCAA
>TCONS_00019420
AATGcgctcctcacacacacactccggctCTCAGCTCTGCTAAACCTATCTCTTATCTTCTGCATTAACATTCCTCCAGACCGAGCACATTAAAGCTGCTTTCGACAACACCGCTTGACCGCCTCAGAATGTCCAACACAACATCCGCGCTGCCCTCCAGTGTTCCAGCTGTCAGCTTGGATCCAAACGCCACACTATGCCAGGATTGGGAACAGTCTCATCACCTGCTGTTCCACCTGGCCAACCTGAGTCTCGGGCTGGGTTTCCTCATTCCCACCACATTAGCGCTTCATATGATCTTCCTCAGGCTGCTGCTGATGACAGGCTGCTCTTTGTTCATAGCGTGGGCTACGTTATATAGATGCACACTGGATGTTATGGTGTGGAATGTGGTTTTCCTTCTAGTGAACTTCATGCATTTCTTCTTCCTGCTTTATAAACGCAGACCGATTAAGATTGACAGGGAGCTCAAGTCAGTGTACAAGCGCATGTTCGAGCCCCTGCATGTGCGAGAGGCTCTGTTTCAGAGACTCACTGGCCAGTTTTGCACTATCCAGACATTAAAGAAAGGCCAGGTTTATGCAGCAGAAGACAAAACCTCTGTTGACGAGCGCCTCAGCATTCTTCTCAAAGGAAAGATGAAGGTATCGTATCGGGGTCATTTCTTGCATAACATTTACACCAATGCCTTCATCGACTCTCCAGAATTCAGGTCAACTCAGATGAACAGGGGTGAACGCTTTCAGGTGACGATCGCTGCTGAGGAGAACTGCAAGCTGTTGTGCTGGTCCAGAGAACGTCTGACTTATTTCCTGGAGTCAGAGTCTTTTCTGAATGAGGTCTTCAGGTATCTCATTGGCAAAGACATCACCAACAAGCTTTACTCCCTCAACGATCCAACCCTCAGTGACAAGGCTGTAAAGAAAATGGACCGCCAGCCGAGTCTGTGTTCCCAGCTGTCTATGATGCAGATGAGGAACAGCATGGCGAGCACCAGTGACACTGACGACGTGCTCAATCAGATCCTGAGAGGTGGATCAACTGGCTCATCACTTCCTGTGACCTCAGATCGGGCCTGATGGGGTAGAAAAATCCTCTGACGAAAACATCCACGACTATGAAGCCAATCGAAGAAGGACTGGAAGATGATGTTTTTGAATCCGAGTCCCCCACCACCTCCCAGAATGTTTCAAAGACCaccaaaaaagacatttaaacgtATTTGATCACCTCGCAGTCTTAGCCTTTAGCATTTCACTGCTCATTCGACAGAAACGAATGTGAGATTACACTAGTATAAGTTAAGAGACCCCTTAGGCAGGCAGATTTATCCTTGAAAATATTTTCGGATATCATATGATCGACTGTAGTATTTTCTTGCTTCACATAACAAACAGTTTGATTTTTCCATCATTTCTCTAATGATCAAGTAGAAATATAGCTTATGCTTCCTTGCATGCTCCTGATTTCTCAAGTCCTATTTTCACATGTGATTATGTTCCAGTGTTCTATTATGCGGATTACACCATTTGTGCCTTTGATTTGATCACATAATGTTACTAAGGAATCACTTAGTTTAAGCAATGTGTGTTACATTTGAATTTACTGAATGTCCTATTTAAAGCATTTTGATCTCTTGTAAGTAGTTTATTTTATTCTGTGATTATAAGGATGAGACGTTTGTGTGTTTAAAATCATACAGATACTTGaaatcactttttaaattaaagttttgcATCATGCTGTCTTCGTGCCAACCTGGGTGTTTTCATAAAAACAAAGAACATTTATGATGCAA

Function

symbol description
bves Predicted to enable cAMP binding activity and structural molecule activity. Involved in heart development. Acts upstream of or within several processes, including animal organ development; bicellular tight junction assembly; and skeletal myofibril assembly. Located in sarcolemma. Is expressed in several structures, including EVL; cardiovascular system; eye; integument; and optic vesicle. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2X. Orthologous to human BVES (blood vessel epicardial substance).

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0007507 heart development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0061436 establishment of skin barrier biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0070830 bicellular tight junction assembly biological_process
GO:0007275 multicellular organism development biological_process
GO:0060429 epithelium development biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0045216 cell-cell junction organization biological_process
GO:0002931 response to ischemia biological_process
GO:0090136 epithelial cell-cell adhesion biological_process
GO:0040017 positive regulation of locomotion biological_process
GO:0001921 positive regulation of receptor recycling biological_process
GO:0008360 regulation of cell shape biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0010842 retina layer formation biological_process
GO:0007155 cell adhesion biological_process
GO:0060047 heart contraction biological_process
GO:0090504 epiboly biological_process
GO:0042383 sarcolemma cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005901 caveola cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016328 lateral plasma membrane cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0030552 cAMP binding molecular_function

KEGG:

id description
ko04530 Tight junction

ZFIN:

id description
ZDB-GENE-040624-11 Predicted to enable cAMP binding activity and structural molecule activity. Involved in heart development. Acts upstream of or within several processes, including animal organ development; bicellular tight junction assembly; and skeletal myofibril assembly. Located in sarcolemma. Is expressed in several structures, including EVL; cardiovascular system; eye; integument; and optic vesicle. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2X. Orthologous to human BVES (blood vessel epicardial substance).

Ensembl:

ensembl_id ENSDARG00000058548

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019417 False 3020 mRNA 0.42 8 7662609 7681144
TCONS_00019419 False 1827 mRNA 0.44 9 7662667 7679980
TCONS_00019418 False 1771 mRNA 0.43 8 7662667 7679980
TCONS_00019420 True 1798 mRNA 0.44 9 7662669 7679980

Neighbor

gene id symbol gene type direction distance location
XLOC_009684 popdc3 coding upstream 3902 7653905 ~ 7658707 (+)
XLOC_009683 stx12l coding upstream 21242 7626535 ~ 7641367 (+)
XLOC_009682 CT574585.2 coding upstream 96514 7564527 ~ 7566095 (+)
XLOC_009681 NA coding upstream 147102 7514850 ~ 7515507 (+)
XLOC_009680 atg5 coding upstream 246077 7380463 ~ 7416532 (+)
XLOC_009686 ccr11.1 coding downstream 16869 7698013 ~ 7699207 (+)
XLOC_009687 cnot10 coding downstream 22390 7703534 ~ 7730836 (+)
XLOC_009688 NA coding downstream 111577 7792721 ~ 7793768 (+)
XLOC_009689 ano10a coding downstream 304742 7985886 ~ 8041348 (+)
XLOC_009690 pomgnt2 coding downstream 458371 8139515 ~ 8162380 (+)
XLOC_009678 CU466278.2 non-coding upstream 367656 7227584 ~ 7294953 (+)
XLOC_009677 NA non-coding upstream 430429 7226676 ~ 7232180 (+)
XLOC_009675 NA non-coding upstream 544041 7118147 ~ 7118568 (+)
XLOC_009691 NA non-coding downstream 674335 8355479 ~ 8372570 (+)
XLOC_009696 NA non-coding downstream 1283745 8964889 ~ 8965839 (+)
XLOC_009697 NA non-coding downstream 1285065 8966209 ~ 8966926 (+)
XLOC_009699 CR394537.2 non-coding downstream 1555988 9237132 ~ 9237246 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location