CI01000051_06837978_06881158 (TRIM67)


Basic Information

Item Value
gene id CI01000051_06837978_06881158
gene name TRIM67
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 6837414 ~ 6881706 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_06837978_06881158.mRNA
AATATTTTTCCCATTACCAGTCAATCATCAGATAACAGTGTGGTAGGATTATGGTGATGCATGTGTGATGAAGTGCTCATTAATTCTGTGCTGTAATTAGACTGTGTGGGCAGGATGGACTGTAAGCAGCTCGATGCACGCTGTGATAAATTCCTTGCCCTAATTATTTACGGCCACTCACAGAAATAGGCTACTGGTCAGCCCTCTCTTGGATGCCATCACAATTACAACGCCTGTCCTCCTTTGACGGGGTTGTTTACACACGGGTTTCTTTAAATTGCAAATTAGGCTTTTTTTCCCCCAAACCCATGACCCTGGAATACGGGACGATAATACAAATTCTTCTCGCCGCATTTAATTAGCGGAATTAAGGGAGTTGTAGTTTTTAAGAGCTCAACTGAAGAGGCGGGTATCGGCAGAGTGACTACAACGCCCACAATCGTTCTCTCAATGCGCATGCGCGGAGCGGGTAACGGAGCTGTCCGCGTCTGGTAGTGCTGCTCTGATTTCATTGAACGGCTGCGCGTGTGAGTGGGTTTATGGACGCGATGGAAGAAGAACTTAAATGCCCGGTTTGCGGTTCTCTCTTTAAGGAGCCCATTATTTTACCGTGTTCTCATAATGTCTGCCTGGCGTGTGCCCGGAATATCATCGTGCAGACCCCGGAGGGAGAGACCCCTCCGCAGAACCGAAGCTCCGGAACCTCGGACTATGATTATCTGGATATGGACAAGATGAGCATGTACAGCGAGACGGACAGCGGCTACGGCTCATACACGCCGTGCCTGAAGTCTCCCAACGGAGTGCGAGTGTTCCCGCCGGCACTGGTCCACCGCCACTGCTCCATCACCTGCCCGCTGTGCCACCGCAGCGTATCCCTGGACGAGCGGGGGCTCCGGGGATTCCCTCGAAACCGACTGCTGGAGGCGATCGTGTCCCGCTACCAGCAGAGCCGCGCCGCCTCTGTCAAATGCCAGCTGTGCGACCGCAATCCGGTGGACGCCACGGTGATGTGCGAGCAGTGCGATGTGTTCTACTGTGCTCCGTGCCAGCAGCGCTGCCACCCTTCCCGCGGACCGCTGGCCAAGCACCGGCTGCTGCCGCCGACTCAGGCACAGGCGGGGATCGCGCAACCGACCGGAGCCTCCGCGCGTAAACAGGCGACTTGCGTGGATCACGAATCGGAGAACTACAACATGTACTGCGTCAGCTGCAAGACCCCTGTATGCTACCAGTGCCTGGAGGAGGGAAAACACGGCAAACATGACGTGAAGCCCCTGCCTGCCATGTGGAAACAACACAAGCTCTGCTTTATGTGTTTGTATTGTCAGCTGTCCCAGGCGTTAAATGGAGTGTCTGATAAAGCCAAGGAGGCCAAGGAGTTCCTGGTGCAACTGAAAAACTTGCTTCAGCAGATACAGGAGAACGGGGTTGAGTTTGAGGCATGTCTGGTCGCTCAGTGTGACTCTCTGATTGAAGCGCTCACTCGGCAGAAGGCCAAACTGCTCACCAAGGTCACAAAGGAGAAAGAAAGCAAACTGAAGACTGTAAAGGATCAGATAACTCACTGCACCATGAAGCTCCGACAGACCACAGGAATGATGGAATTCTGTCTGGAGGTTATTAAAGAGAACGATCCCAGTGGATTCCTACAGATCTCAGATGCATTGATAAAGCGTGTTCAGGCCTCTCAGGACCAGTGGGTAAAAGGTGCGTTGGAGCCAAAGGTCTGCCCAGAATTTGCCTTGACAGTCAACACAGACCCTCTGATGCAGTCAATTCTCCAGCTGGACTTCACCCAGAATAAAGATGGTCAGGAGGCTGCATCATTGAAACAAATGCATGCAAGTGACCAGAAAGAGGAGGAGAACACAGGAGCAGAGAGCCCCACAGTGCCTCCCGCACCACTGTTACAGTTGGAAAAATGCTGCATGCGGAACAACAGCGCCACTCTGGCCTGGAGGATAACTACAGTCCAAGCCCTGCCTGTAGAGGGTTACGTGCTGGAGCTGGATGACGGGAATGGCGGGCCTTACCGGGAGGTATATGTGGGTAAAGAGACCGTCTGTACAGTTGACGGCCTTCATTTTAACAGTTCGTACAACGCTCGAGTCAAAGCGTACAACTCTGCTGGAGTGGGAGCGTACAGCAAGGTTGTTGTTCTGAAGACATCTGATGTGGCGTGGTTTACCTTTGACCCTACGTCAGCTCACAGAGACATTGTCCTGTCCAACGAAAACCAGACTGTGACTTGTAACAGTTACGATGATCGCGTAGTGCTCGGGACAGCTGCCTTCTCCAAGGGTGTGCATTACTGGGAACTTAGCGTGGATCGCTATGATAACCACCCCGATCCTGCATTCGGTGTGGCACGGATTAATACAATGAAGGACATGATGCTTGGGAAGGATGATAAGGCCTGGGCTATGTATGTGGACAACAATCGCTCCTGGTTCATGCACAACAACTCCCACACCAACAGGGCTGAGGGTGGCATCACGAAAGGTTCGACTGTGGGGATCCTGTTAGACCTAACAAAACATACACTGACCTTCTTCATCAATAAACAGCAGCATGGACCAGTGGCTTTCGAGAACCTGGAGGGTGTGTTCATGCCCGCCGTCAGCCTCAACCGCAACGTCCAGGTGACTCTGATCACAGGTCTGGAAGTCCCAAAGAGCATCATGTGATCATCTTTGACCAATGACAACGAGCCAGATCTTTCTTATCAAACAAGTCAGTGCTCTTATACTGCACTGATATATAAAGCTGATAAAACTTTGGGGGGAAAAAATATGTTTTGGAATATTTGATCTAGTTAATATTTTTCCCTTATGGTCATCTGGGTGATTTGCATTTCAGTGTTTACAAATCATTCCCATGTTTACAGAAAAACAAACCACTGGATGTCCCCATTGGGGCCGAAGCTGGAGTCGAACCCAAAGCACTTTGAAGTAGAGTTCAGCCTCTTTTTCATACCTCCAATGAAAATTTAGCACCGTTCAAAAAATGTAATTTGATTTAAAAAATCAACATATCAAGCATTTGATATGTTAGCAATGGAATAGAGCAACCGATAGTAATCAAACAACTGTGAGCCTAAAAGTGAATTTAAAATCATTTCAGGTTATTTAACACGCTACACGAATCTCAGGTTTACTCACCTTTAATCTGCTGTGTGATCACAGCACACACTTCAAAAGGCCTCAACAAATTCATTACTCAGACCAGAAATCTGGGTCGCTGGGATTAAA

Function

symbol description
trim67 Predicted to enable zinc ion binding activity. Predicted to be involved in regulation of cellular protein localization. Predicted to act upstream of or within negative regulation of Ras protein signal transduction; positive regulation of neuron projection development; and positive regulation of ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and cytoskeleton.

GO: NA

KEGG:

id description
K10649 TRIM9_67; tripartite motif-containing protein 9/67

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_06837978_06881158.mRNA True 3254 mRNA 0.50 12 6837414 6881706

Neighbor

gene id symbol gene type direction distance location
CI01000051_06803307_06824913 GNPAT coding downstream 12501 6803307 ~ 6824913 (-)
CI01000051_06739181_06742303 PLVAP, VSG1 coding downstream 95111 6738639 ~ 6742303 (-)
CI01000051_06423541_06426013 NA coding downstream 409801 6422096 ~ 6427613 (-)
CI01000051_06366293_06372185 DTL coding downstream 465229 6366118 ~ 6372185 (-)
CI01000051_06332084_06361639 PPP2R5A coding downstream 475567 6331867 ~ 6361847 (-)
CI01000051_06884323_06886377 EXOC8 coding upstream 2302 6884008 ~ 6886639 (-)
CI01000051_06910132_06916487 NA coding upstream 27734 6909440 ~ 6916487 (-)
CI01000051_06958650_06963551 CLEC11A coding upstream 76866 6958572 ~ 6963821 (-)
CI01000051_06966165_06969998 NA coding upstream 84387 6966093 ~ 6970217 (-)
CI01000051_07218226_07226180 CHRNA4B coding upstream 336436 7218142 ~ 7226726 (-)
G222137 NA non-coding downstream 73994 6763190 ~ 6763420 (-)
G222054 NA non-coding downstream 147509 6663608 ~ 6689905 (-)
G221890 NA non-coding downstream 440427 6396781 ~ 6396987 (-)
G221858 NA non-coding downstream 642519 6194660 ~ 6194895 (-)
G222173 NA non-coding upstream 91376 6973082 ~ 6994996 (-)
G222190 NA non-coding upstream 129327 7011033 ~ 7011313 (-)
G222194 NA non-coding upstream 132399 7014105 ~ 7014311 (-)
G222195 NA non-coding upstream 135253 7016959 ~ 7051677 (-)
G222243 NA non-coding upstream 229908 7111614 ~ 7112897 (-)
G221840 NA other downstream 703835 6132773 ~ 6133579 (-)
G221575 NA other downstream 1318590 5513952 ~ 5518824 (-)
G220041 NA other downstream 2679311 4155730 ~ 4158103 (-)
CI01000051_02955633_02960400 SCRN2 other downstream 3875920 2955380 ~ 2961148 (-)
G218861 NA other downstream 3996782 2840270 ~ 2840632 (-)
G222729 NA other upstream 1460443 8342149 ~ 8342652 (-)
G222730 NA other upstream 1461264 8342970 ~ 8343438 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017104 TRIM67 coding NC_007131.7 CM002904.2 4060839 ~ 4132099 (+)
bowfin (Amia calva) AMCG00003633 trim67,LOC106571401 coding CM030121.1 CM030121.1 12872513 ~ 12880357 (+)