CI01000051_07218226_07226180 (CHRNA4B)


Basic Information

Item Value
gene id CI01000051_07218226_07226180
gene name CHRNA4B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7218142 ~ 7226726 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_07218226_07226180.mRNA
ATTAAAAACTGATCATGCTCACATAAATATATCAGGCACTTTTAAATAAGGCATTTGGCCACATCATTTTAAGGGTTTTGTCTTCAATCAATACCTTTATGTCCTCACTCTCTCTCTGTGACATTCTCATGTATAAGGTGCAGCCTCCAGCGCATAACATCTACTCAGCGTAATAGGCAGAGATTGGAAGGTGGAGGGGCCGGAGAGGAGAGATACTGAGAGTGAAACAGCAAAACACACAGAGAGAGAGAGAGGAAAGGAAGCAGAGAAAGTGGGAGGGAAAAGAGTCTAATGACAGCTAGAGAGGTATTCTGAGGGACTCCTCACTTTTACAAGAGGTTTGGACACTGAATGACTTTTTGTGGCTGTTTTCATGCACTTTTTGAGTCTCTGTTTTTTCAGTTTGCGAAGAGCTGATCGACCAGTCTTTCTTTATATATAATTTTTATCTAATTGTATTAAGTAACTGAACATAGTTTTCAGTTTCTGTGTCGAAATTCTTGCAGATCACCAGAGTGGGATATCATCTGACATCAAGTGAACAAAATGAGAGCAGCATGGAGTGTCTTCTTGCTTCTGTCTGTCTGTTTGCAGCTGGCGTTTGTGTTTTCCACCAGTCCGGCTCGTGCCCATGCGGAAGAAAGACTCCTCCGGTCTTTGTTCAGCAACTACAACAAGCTCTCTCGTCCTGTAGCAAACATCTCAGATGTGGTTCTGGTCCACTTTGGCCTGTCCATTGCTCAGCTCATTGATGTGGTGAGTCTCAGATCCACTCCAGTGCAGCATCTTGATTTTACAAAAATAGTCACCCCCCCTTCTCTTATTACTCTCTTTTACATGGATATCCCACTTTGCTTCATAATAAACCAGGATGAGAAGAATCAGATGATGACCACAAATGTCTGGGTGAAGCAGGAGTGGAACGACTACAAGCTGCGCTGGAACCCAGAGGAGTATGAGAATGTCACCTCCATCAGGATCCCCTCCGAGATCATCTGGAGACCGGATATTGTGCTCTATAACAAGTGTATATTTCATTGCAGGCACTGTCTGACAGATTTGCGTTTGATTTGCAGTGCGGACGGAGACTTTGCAGTGACACACTTGACTAAAGCCCAGGTGTTTTACAACGGGAGGATAAAATGGAAACCTCCTGCCATTTATAAAAGCTCCTGCAGCATCGATGTCACCTTTTTTCCCTTCGACCAGCAAAACTGCAAAATGAAATTTGGCTCTTGGACGTACGATCGGGCCAAGATTGATCTGATCAGCATGGCCAGTGATGTAGACCAGATGGACTACTGGGAAAGCGGGGAATGGGTCATAATAAACGCTGTTGGTACTTACAACATCAAGAAGTACGAGTGCTGTACAGAAATCTACCCAGACATCACCTACTCTTTCATCATCAGACGTCTTCCTCTGTTCTACACCATCAATCTAATCATCCCCTGCCTGCTTATATCCTGCCTGACGGTGCTGGTCTTCTACCTTCCCTCGGAGTGTGCGGAGAAAATCACACTGTGTATTTCCGTCCTGCTCTCTCTGACAGTTTTCCTCCTGCTAATCACGGAAATTATCCCCTCAACCTCACTGGTCATCCCACTTATTGGCGAGTACCTCCTCTTCACCATGATCTTCGTCACTCTATCCATCATCATCACAGTGTTTGTGCTCAACGTACACCACCGTTCGTCCCGCACGCACAGCATGCCACACTGGGTCCGCCAGTTTTTTCTTCACCTGGTGCCCCGTTACCTGTTCATGAAGCGTCCACCTGCCTCTGGTAAGAGGAACTGTGGGAAACTGATTGAGATGATGCACAAGCCAATGGAGGCACAGTCCATGTTTCTACGGAACAACATTCTGGATATCTCTCCGCAAAGTCCGCTCCACCATTTGGACGTTACTTCAGTTCAGCAGGACTCTTCCCCCAAACCCATGTTTTTCTGCAGTTCTCCCAGCAGCCAGTATTCTATCCTGCACGAAGAAACTTCACAAACGCCGGTCATCGGTTACACGTGTGCATACACAAACAGCATTTTTGCCTCCAGCACATCTTCATTTCCAGATTCTATCCTTGGTACTCTGCTGCACACTATCCCGCAGGATGGAGCCGAATGTACAGACTGTGATATCCAAGGCCACAATGCTGAGAGTGTCTTCATGGAAGCCAAAGAGAGTATTCTGGGAGCAGGGAGTTGTCAACACTGTCTTACATCTGAGGGGACGAGTCTGCAGAAGCTTGATCACGATGAAGCAGGCAGGTGTACTAGACATAACAAGCCCAACGCACAGATCTTCAGTTCTGTCAGTGATGGCACTGCTGATCTGAATGCAGTGGAACCGGTGAGCAATCTGTCACAGTCTCTGCTCAAAGCCTTGGAAGGAGTTCAGTACATCGCTGACCATCTCAGAGCAGAAGATTCAGACTTTTCAGTGAGGGAAGACTGGAAATATGTTGCCATGGTGATTGATAGAATATTCCTCTGGATGTTTGTGCTGGTGTGCATTCTGGGGACGGTCGGACTGTTCCTCCCACCGTGGCTGGCTGGAATGATCTAGAACATCGTGCAGAGTCTTTGAATGGCTCTGAGTGGGTGGGGAATGGCCTTGTCAATCACACTTGACTTCAGTGACCTCATTAAA

Function

symbol description
chrna4b Contributes to acetylcholine receptor activity. Acts upstream of or within response to nicotine. Part of acetylcholine-gated channel complex. Is expressed in central nervous system; cranial neural crest cell; and pharyngeal arch. Human ortholog(s) of this gene implicated in autosomal dominant nocturnal frontal lobe epilepsy 1 and nicotine dependence. Orthologous to human CHRNA4 (cholinergic receptor nicotinic alpha 4 subunit).

NR:

description
nicotinic acetylcholine receptor alpha 4 subunit, partial

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04806 CHRNA4; nicotinic acetylcholine receptor alpha-4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_07218226_07226180.mRNA True 2649 mRNA 0.47 6 7218142 7226726
Loading

Neighbor

gene id symbol gene type direction distance location
CI01000051_06966165_06969998 NA coding downstream 247925 6966093 ~ 6970217 (-)
CI01000051_06958650_06963551 CLEC11A coding downstream 254321 6958572 ~ 6963821 (-)
CI01000051_06910132_06916487 NA coding downstream 301655 6909440 ~ 6916487 (-)
CI01000051_06884323_06886377 EXOC8 coding downstream 331503 6884008 ~ 6886639 (-)
CI01000051_06837978_06881158 TRIM67 coding downstream 336436 6837414 ~ 6881706 (-)
CI01000051_07288569_07296096 ELOVL1B coding upstream 61359 7288085 ~ 7296096 (-)
CI01000051_07403086_07404051 NA coding upstream 175341 7402067 ~ 7404784 (-)
CI01000051_07410144_07439528 MAST3, MAST3B coding upstream 182737 7409463 ~ 7439528 (-)
CI01000051_07580256_07582183 NA coding upstream 353515 7580241 ~ 7582183 (-)
CI01000051_07584669_07585335 NA coding upstream 357629 7584355 ~ 7585335 (-)
G222295 NA non-coding downstream 45271 7162053 ~ 7172871 (-)
G222243 NA non-coding downstream 105245 7111614 ~ 7112897 (-)
G222195 NA non-coding downstream 166465 7016959 ~ 7051677 (-)
G222194 NA non-coding downstream 203831 7014105 ~ 7014311 (-)
G222190 NA non-coding downstream 206829 7011033 ~ 7011313 (-)
G222353 NA non-coding upstream 67581 7294307 ~ 7295633 (-)
G222355 NA non-coding upstream 105572 7332298 ~ 7332515 (-)
G222356 NA non-coding upstream 115382 7342108 ~ 7342528 (-)
G222361 NA non-coding upstream 129377 7356103 ~ 7356312 (-)
G222363 NA non-coding upstream 130423 7357149 ~ 7357385 (-)
G221840 NA other downstream 1084563 6132773 ~ 6133579 (-)
G221575 NA other downstream 1699318 5513952 ~ 5518824 (-)
G220041 NA other downstream 3060039 4155730 ~ 4158103 (-)
CI01000051_02955633_02960400 SCRN2 other downstream 4256648 2955380 ~ 2961148 (-)
G218861 NA other downstream 4377510 2840270 ~ 2840632 (-)
G222729 NA other upstream 1115423 8342149 ~ 8342652 (-)
G222730 NA other upstream 1116244 8342970 ~ 8343438 (-)

Expression

CI01000051_07218226_07226180(CHRNA4B) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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CI01000051_07218226_07226180(CHRNA4B) Expression in each Bioproject

Bar chart with 23 bars.
CI01000051_07218226_07226180(CHRNA4B) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004026 chrna4b coding NC_007122.7 CM002895.2 12982260 ~ 12998400 (-)