XLOC_009688


Basic Information

Item Value
gene id XLOC_009688
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7792721 ~ 7793768 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021885
AAAGATGCGTTAAGACACACGAAGGCTTTTCCCGAAATGGTTCCCTGATCAATTAATGCAGATTACAGATTTAGCAGGCTGTGCTGTGGGCTACATTCTTGTCAAATACATTCCTGTTGAAGAGTTTCGATGGAGCTGCGCTCTCTTgacttttatgttgttgttgttatcgaCACTATTTCGCAGAACAAACTCTATGCGCAACTTCGCGGGTGCACTTTAACCATTTGGAAACCAAGTGTCATTTTGAGGCCTTATAATCCCTCGGTGTGGGGCATTAACATTGTTGCGAAACATAAAATCCGCTGCGAGGTCCCTGCTCCGATCCTCCCCCACCGCCGCATGACGAGAGGGGCCAACCACGCTGATTCACGGTCACTTTCTTCCGTGCAAAGCGCAGAAACGTCCGTTTTCCATCAACGCGCTGTAGTCTAGCATCTGCGCGTCAGTATTGTCAAAACGCGCTTGCGCGAGCcgcaattaaataattcaaagtaTGTCCCATGTAGCTCGTTAGCACGCAGCGCCCCTCAAGATCCTGTTACTGTGGTGAGGCTGAAAAGCCCCTTTAACTTCCCCCAGTCCGCTTGCTGTAGTTTGGCGTAATGGTCTCAACTAACCATATTCGTCTCGCGTCTGCAGCGTGAAACCAACGCTCTCCCCGCGCACCTCTTCAATCCGCCTTCATTTTTATTGGGAATGAATGACGCCGCCGCGGACAACAACTCAACAGCGCGTGACCATCAAGCGAACCACGTCCATACTAAAAAATTCTAGAACGCACTTCCGCCTGAGAGCACTCGGGAGGGGCGGGGCTTGTGTGACAGGGGGGCTGGGCTGGGCTTTGAGTAATAAAACAGCTACATGTTCAGCGAACGATGATTATTAATTGTGCTCACATACATCATATCATTGCTATAATTCACAATTCATCTGCTCATCTGGAAAACTGCAGACCCTCTTTTGATCaaataatttgtaatttgtattttaggAATCAGCTGACTAAAGTTTTATGGCtttctttcaaaataaaaaaaattactct

Function

GO:

id name namespace
GO:0042693 muscle cell fate commitment biological_process
GO:0042694 muscle cell fate specification biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0006413 translational initiation biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0006457 protein folding biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007418 ventral midline development biological_process
GO:0021508 floor plate formation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021885 True 1048 lncRNA 0.47 1 7792721 7793768

Neighbor

gene id symbol gene type direction distance location
XLOC_009687 cnot10 coding upstream 61885 7703534 ~ 7730836 (+)
XLOC_009686 ccr11.1 coding upstream 93514 7698013 ~ 7699207 (+)
XLOC_009685 bves coding upstream 111577 7662609 ~ 7681144 (+)
XLOC_009684 popdc3 coding upstream 134014 7653905 ~ 7658707 (+)
XLOC_009683 stx12l coding upstream 151354 7626535 ~ 7641367 (+)
XLOC_009689 ano10a coding downstream 192118 7985886 ~ 8041348 (+)
XLOC_009690 pomgnt2 coding downstream 345747 8139515 ~ 8162380 (+)
XLOC_009691 NA coding downstream 561711 8355479 ~ 8372570 (+)
XLOC_009692 ccr2 coding downstream 874751 8668519 ~ 8670413 (+)
XLOC_009693 ccr2 coding downstream 879868 8673636 ~ 8681178 (+)
XLOC_009682 CT574585.2 non-coding upstream 226626 7564527 ~ 7566095 (+)
XLOC_009681 NA non-coding upstream 277214 7514850 ~ 7515507 (+)
XLOC_009678 CU466278.2 non-coding upstream 497768 7227584 ~ 7294953 (+)
XLOC_009677 NA non-coding upstream 560541 7226676 ~ 7232180 (+)
XLOC_009675 NA non-coding upstream 674153 7118147 ~ 7118568 (+)
XLOC_009696 NA non-coding downstream 1171121 8964889 ~ 8965839 (+)
XLOC_009697 NA non-coding downstream 1172441 8966209 ~ 8966926 (+)
XLOC_009699 CR394537.2 non-coding downstream 1443364 9237132 ~ 9237246 (+)
XLOC_009702 NA non-coding downstream 1710605 9504373 ~ 9505519 (+)

Expression


Co-expression Network