CI01000051_07855788_07865402 (MED16)


Basic Information

Item Value
gene id CI01000051_07855788_07865402
gene name MED16
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7855240 ~ 7865625 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_07855788_07865402.mRNA
ATATAAAAAGAAAGGAACAAAAGTGATTTCGTAGAGGATTTAAACAAAAAAATGCAGTGCAGACAATGCACAGGCTATGTTTTACCATTAAGACATTACAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGTGTTTAAAAAAAAAAAAATCTCTAGTCGTTCTCCAGTCCGATAGGGGGCAGCAAGTAGTAGTTGAGTCTCTAAACGCGGAAATTATAGACGAAGATAGACGCTCAGTGATGTGCCGCTTTAAAGTGCAGATAATACTATTAGAATTAAAATAGATTTCGTAATGCTAGGTCAGTTATACTTTAACACATTTCTTTCTTTTGTATCTTAAAAGCAGTAGCATGTAGTTTTATAACTGTTATTCCCTTCATTTTGTTCTGTTTCTGTACAGTAGCAGGGATGCTAAGTGTTTGCTTTTATTGACTCACAGTGATTGTTTGCATATTTAAAGGTCTTCAGTAAAGGTATCTGTGCCGTTAACCTTCAGTTTAATTCATTATATAATGGAGATCGCGTATGTTTGCGAGTGGGAGAAGAGACCCAAGAGCAACCACTGTCCCTCAATTCCTCTGGTGTGCGCCTGGTCATGTAGAAACCTCATCGCCTTCACCACTGATCTGAAGAATGAGGAGGATGATAAAGGTCTGGACAATGACTTTATTATCAATATTACCAGACCCGTTGATTTGAGTCATATGATACACATCATTGACACTGATCACCCCTGGGATGTGTATTCAATCAACTCTGGTCACACTGAGGTCATTTCCTGCCTGGAGTGGGACCAGTCAGGCTCGAGGCTGTTGTCTGCTGATGGTGATGGTCAGATTAAGTGTTGGGGCATGACAGAACACCTGGTGAACAGCTGGGAGTGCACACAGAGCAGCTCAGTGGATGGAGACCCGATCGTATCCCTCTCATGGTTACACAATGGAGTTAAACTTGCCCTGCATGTTGAAAAGTCTGGCTCTACAAACTTTGGAGAGAAGTTTTCCCGGGTTAAGTTCTCCCCCTCTCTCACGTTGTTTGGCGGGAAGCCCATGGAGGGTTGGTTAGCAGTGACAGTGAGCGGTCTGGTGACTGTGTCATTGTTAAAGCCAAACGGGACTCTGCTAACCGCCAGCGAGAGCCTGTGCAGGCTGAGGGGCCGTGTGGCCCTGGCTGATATCGCCTTCACAGGCGGTGGCAATATAGTGGTGGCGGCCACCGATGGCAGCAGTTCTTCTCCGGTGCAGTTTTATAAAGTGTGTGTGAGCGTAGTGAATGAGAAGTGCCGCATTGACACTGAGCTACTGCCCTCACTATTCATGCGCTGCACCACTGACCCGGTCCGGAGGGACAAGTACCCCGCCGTCACACACCTTAAATTCCTGACTCGTGAAAACTCTGAACAGAAGTCAAACCTGTTGTTTGTTTTGTCACCATTTTTAGTAGGCGAAAAGCAGCCAATGATTCTAAAGTGGCGTATCCTCTCAGCAACCAATGATCTGGACCGTGTGTCTGCTGTTGCTCTGCCTAAACTTCCCATCTCCATCTCGAACACTGATCTCAAAGTTGCCTCCGACACCAAGTTCTTCCCAGGCCTTGGTCTTGCACTGGCGTTCCATGATGGCAGTATCCAGATTCTCCATCGCCTTTCCCTGCACACCATGGGGGTGTTCTACGGTTCCTCTGGTTCCTCCCAGCGTGTTGGAGAAGAACCTGCCATTAAACGCCAGAGGGCTGGTGGCCCCACACTGCACTTCAAAGCCCTTCAGTTCTCCTGGACATCTCTGGCACTGGTGGGCGTGGACAATCATGGCAAGTTGCACATGCTCCGAGTGTCCCCATCCATGGGCCAAATGTTGGACATGAACACACTTCTGCGCCACCTGCTATTCCTCCTGGAGTACTGCATGGTGACTGGGTATGACTGGTGGGACGTGCTGCTGCACGCGCAGCCCGGCATGGTGCATAACCTTCTGGAGAAGCTTCACGAAGAGTACATGAGACAAAACCAAGCACTGCAGCAGGTTTTGTCCACCCGTATAGTGGCAGTGAAGGCGTCTCTGTGTAAGCTGTCCTCTGCCACTGCAGCAAGAGCCTGTGACTTCCATGCTAAACTGCTCCTTATCGCCATCAGCTCCACGCTGAAGTCTTTACTGAGACCTCATGTGCTCAACACCCCTGACAAGAGTCCTGGAGACAGACTCTCTGAGATCTGTGCCAAAAACACTGACACTGACATTGATAAGGTGATGATCAACCTTAAGACGGAGGAGTTTGTTCTGGACGGACCACCCCTCCAGTCTCTCCAGCAGCTCATTCAGTGGGTCGGAGACTTTGTTCTTTACCTGCTGGCCAACCTGCCCAACCAGGGCTCCATTGTGCGTCCAGGGTTTGGGTTCCTGCGGGACGGTGCATCTCTGGGCATGCTCAGAGAGATGCTGGTGATGATCCGTATTTGGGGCCTGCTGAAACCAGGCTGTTTGCCCATCTACACGGCCACATCTGACAACCAGGACAGCATGTTTCTCCTCTTCCGCCTGCTCACTAAACTATGGCTCTGCTCTCGAGATGAGAGTCACCCTCAGGACCCCGATGAGACATTGATTGATGAGTGCTGTCTGCTGCCCAGTCAGCTCCTAGTGCCCAGCATGGACTGGCTGCCCATCAACGATGGTGTCATCACTAAGATCCAGAGCAAACACCCACTCAGACTTCAGTTTGGCAAACCGTACACCATGCCCGGGGTCAACCCCAATGCACAGGTGGAGGTGTTCAGAATTCCAGCATCTCAGAGGATGGACCATCTGCGATGTTTACATTTGGGCATCTCTCCAACAGAGGACAGCAAAGCTTGCACCAGGTGTGGCTGTGTCACCATGCTGAGATCCCCAAATAAAACCAACGCCATGAGACAGTGGGAGCAGCGCTGGATCAAGAACTGTCTGTGTGGAGGTCTCTGGAGAAGAATCCCCTCCGCACTAACATAAAGATCACACCATCTAGAAATGAGGAAATGTTAAAGCTGCATGGATCTCTCATTGTAAACCAACGTATAGATCTGTACAACAAAGCAATCTTTATTTTCTTTAAAACATGTCCTACAGGACCTTCTCCCAGCCACAGTGTCTGCTGGAGAGAGTGAATAATGTCTTCTTTTTTGCTGTTGTAAATATGAACCATGTATTTTGTTTTGTAATGTTGTAGTTTGTA

Function

symbol description
med16 Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED16 (mediator complex subunit 16).

GO:

id name namespace
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15159 MED16; mediator of RNA polymerase II transcription subunit 16

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_07855788_07865402.mRNA True 3243 mRNA 0.48 13 7855240 7865625

Neighbor

gene id symbol gene type direction distance location
CI01000051_07806350_07831779 GRIN3B coding upstream 22906 7806350 ~ 7832334 (+)
CI01000051_07634084_07726089 NA coding upstream 129131 7633879 ~ 7726109 (+)
CI01000051_07611022_07612093 NA coding upstream 243147 7610449 ~ 7612093 (+)
CI01000051_07542167_07549737 ARRDC2 coding upstream 304580 7542167 ~ 7550660 (+)
CI01000051_07534938_07540104 NA coding upstream 314822 7532639 ~ 7540418 (+)
CI01000051_07873312_07878328 PLPPR3B, PLPPR3 coding downstream 7452 7873077 ~ 7878627 (+)
CI01000051_07913334_07929103 PALM1A, PALM coding downstream 47709 7913334 ~ 7929182 (+)
CI01000051_07938052_07941645 MISP coding downstream 72067 7937692 ~ 7942111 (+)
CI01000051_07946087_07950464 NA coding downstream 80391 7946016 ~ 7951481 (+)
CI01000051_07954270_07957397 NA coding downstream 88645 7954270 ~ 7957559 (+)
G221333 NA non-coding upstream 14466 7804351 ~ 7840774 (+)
G221409 NA non-coding upstream 399703 7455331 ~ 7455537 (+)
G221408 NA non-coding upstream 403229 7451740 ~ 7452011 (+)
G221406 NA non-coding upstream 404350 7450479 ~ 7450890 (+)
G221336 NA non-coding upstream 429821 7422923 ~ 7425419 (+)
G221530 NA non-coding downstream 130397 7996022 ~ 7996297 (+)
G221538 NA non-coding downstream 143290 8008915 ~ 8009351 (+)
G221539 NA non-coding downstream 150619 8016244 ~ 8016535 (+)
G221552 NA non-coding downstream 175992 8041617 ~ 8041854 (+)
G222631 NA non-coding downstream 358325 8223950 ~ 8224280 (+)
G221386 NA other upstream 442233 7401175 ~ 7413007 (+)
G221319 NA other upstream 512694 7342041 ~ 7342546 (+)
CI01000051_06825895_06830637 NA other upstream 1022172 6825895 ~ 6830637 (+)
G219803 NA other upstream 2803207 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 3479910 4372658 ~ 4393677 (+)
CI01000051_08211233_08214513 NA other downstream 240018 8209722 ~ 8214696 (+)
G222727 NA other downstream 477317 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003345 med16 coding NC_007122.7 CM002895.2 14104417 ~ 14143702 (+)
bowfin (Amia calva) AMCG00006144 med16,LOC106613614 coding CM030142.1 CM030142.1 16694712 ~ 16703925 (-)