G217077


Basic Information

Item Value
gene id G217077
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 73814 ~ 83504 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU246256
ACATCTTGGATGACATGGGGGTGAGTAAATTATCAGGAAATTTTAATTCTGAAGTGAACTAATCCTTTAANNNNNNNTGTACACAAGATCATGAATGTCAGATTCTCTCATTCTTGTGTCAGATCCACAAATCTCAAGAAGGTGTCTGTTGCTTTTAGTTTTGGCCCATCATGAATGGTCAGTGCATAGACATAAACATTTATAATATCTATCATCCTTTTTGGATAGTTGCTGAAATCCTTTCATAGATGTGAAAAAAAAAAGGGAAAAAGAACATTGAGCAAATGTAAGACCGTGCAAAAGCCGAACATGTTGCATAAGGGGTTTTGTTTGTATTATCAAAACCTTGGAAAGGCTAAAGAAAAATAAATAATTTC
>TU246257
CAGGAAATTTTAATTCTGAAGTGAACTAATCCTTTAANNNNNNNTGTACACAAGATCATGAATGTCAGATTCTCTCATTCTTGTGTCAGATCCACAAATCTCAAGAAGGTGTCTGTTGCTTTTAGTTTTGGCCCATCATGAATGGTCAGTGCATAGACATAAACATTTATAATATCTATCATCCTTTTTGGATAGTTGCTGAAATCCTTTCATAGATGTGAAAAAAAAAAGGGAAAAAGAACATTGAGCAAATGTAAGACCGTGCAAAAGCCGAACATGTTGCATAAGGGGTTTTGTTTGTATTATCAAAACCTTGGAAAGGCTAAAGAAAAATAAATAATTTCGATATAAAAAAAGCTGTTGTTTGCCGATTCTTTTGTGACCAATCTTTATTTTAGGTTCTGAGGTACATGCTGAATTCCTTACCACAACACTACATTGACAAAACTGAGATTTGCATAAAGTAACTTATGTCAGTATTATACTAATAGTGTCATATTAGCAGATGAAACAGATTCCCTTTACTCTAACAAAAAAATAAAAGCATATAGAGGTTGCATGGTCATCGGTTAGTATCGAACATGTGACGTCTGTAAACAGCTGGATGTGGCAATAACAATATACATTTTTTTCACAAATCACAAGTGACATTCATTTCCCTCCCTTATAAAATGAAAACACTTCAAATATCTTTAAAATGAAGACAATTTTGTCTTAAAGCAACACAAAATATTTGTTCTTCATAGCCATTACTAAAATATCTCAGTGCTTAGAGTCAAAACATCTGTCAGAAATGTGGCAATCAGCAAGGTCAGTCTATGGTCAGTTTTCCCTTTACACAGCAGTCTTTTCAAGACTGTGAAAACATGTCAGTTTTCATTTTATAAAATCTATAAATAAAAAGATTTAAGGGTCAAAACAAAGTGAAAGTTATTAAAAAAAGAATGTCATGTAAACTTGCTTTTGTCAAGTTTAAAAAACAAGAAACTAAAATGTTCATTAACCTTCCAGTGTATGAATCTCTTGCATCATTTTCAGTAAACTCGATGCATTTTGTGGCATGTGCTCCACTGTCACTCCAGCAGCCGCTTCTCTTTTAAATTCAAGTGTTCTCAACCTTTCGTCTTTGTGTGAACCAGAGTAAAGATGAAACCACAACTGTGAATCCGGTGA
>TU246259
CAGGAAATTTTAATTCTGAAGTGAACTAATCCTTTAANNNNNNNTGTACACAAGATCATGAATGTCAGATTCTCTCATTCTTGTGTCAGATCCACAAATCTCAAGAAGGTGTCTGTTGCTTTTAGTTTTGGCCCATCATGAATGGTCAGTGCATAGACATAAACATTTATAATATCTATCATCCTTTTTGGATAGTTGCTGAAATCCTTTCATAGATGTGAAAAAAAAAAGGGAAAAAGAACATTGAGCAAATGTAAGACCGTGCAAAAGCCGAACATGTTGCATAAGGGGTTTTGTTTGTATTATCAAAACCTTGGAAAGGCTAAAGAAAAATAAATAATTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU246256 False 377 lncRNA 0.33 2 73814 82675
TU246257 False 1173 lncRNA 0.33 2 73847 83504
TU246259 True 344 lncRNA 0.33 2 73847 82675

Neighbor

gene id symbol gene type direction distance location
CI01000051_00017447_00029701 TAB2 coding upstream 44013 17447 ~ 29801 (+)
CI01000051_00094391_00124007 SNX17 coding downstream 10887 94391 ~ 124160 (+)
CI01000051_00147585_00164301 NA coding downstream 64081 147585 ~ 165049 (+)
CI01000051_00194573_00205676 NA coding downstream 110323 193827 ~ 205735 (+)
CI01000051_00414617_00476423 XKR6B, XKR6 coding downstream 331113 414617 ~ 476423 (+)
CI01000051_00487642_00497395 CCM2 coding downstream 404138 487642 ~ 498310 (+)
G217097 NA non-coding upstream 38421 35164 ~ 35393 (+)
G217096 NA non-coding upstream 38957 34436 ~ 34857 (+)
G217082 NA non-coding downstream 45540 129044 ~ 129591 (+)
G217093 NA non-coding downstream 47086 130590 ~ 131462 (+)
G217110 NA non-coding downstream 87974 171478 ~ 171725 (+)
G217111 NA non-coding downstream 89316 172820 ~ 173271 (+)
G217112 NA non-coding downstream 90004 173508 ~ 173776 (+)
G217075 NA other downstream 240961 324465 ~ 384128 (+)
CI01000051_00638200_00720543 CDC42BPB other downstream 554086 637590 ~ 720669 (+)
CI01000051_02060996_02061735 NA other downstream 1976483 2060534 ~ 2062355 (+)
G218981 NA other downstream 3161939 3245443 ~ 3246873 (+)
CI01000051_04374052_04393328 NA other downstream 4290906 4372658 ~ 4393677 (+)

Expression


Co-expression Network