Gene
RNA
| Item | Value |
|---|---|
| gene id | G217430 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 128614 ~ 128880 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU246672 | True | 267 | lncRNA | 0.25 | 1 | 128614 | 128880 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000051_00083434_00086769 | NA | coding | downstream | 41255 | 82720 ~ 87359 (-) |
| CI01000051_00036318_00057051 | SCARA5 | coding | downstream | 71563 | 36318 ~ 57051 (-) |
| CI01000051_00000977_00002147 | NA | coding | downstream | 126075 | 810 ~ 2539 (-) |
| CI01000051_00131867_00138611 | ZNF513 | coding | upstream | 1692 | 130386 ~ 138790 (-) |
| CI01000051_00224709_00227613 | NA | coding | upstream | 95627 | 224507 ~ 227613 (-) |
| CI01000051_00262483_00263385 | BLK | coding | upstream | 133561 | 262441 ~ 263385 (-) |
| CI01000051_00278614_00302552 | NA | coding | upstream | 149312 | 278192 ~ 304373 (-) |
| CI01000051_00334616_00337009 | SOX7 | coding | upstream | 205173 | 334053 ~ 337197 (-) |
| G217410 | NA | non-coding | downstream | 30906 | 80788 ~ 97708 (-) |
| G217426 | NA | non-coding | downstream | 51327 | 73998 ~ 77287 (-) |
| G217453 | NA | non-coding | downstream | 57094 | 70343 ~ 71520 (-) |
| G217399 | NA | non-coding | downstream | 109252 | 18604 ~ 19362 (-) |
| G217411 | NA | non-coding | upstream | 232 | 129112 ~ 129592 (-) |
| G217468 | NA | non-coding | upstream | 12625 | 141505 ~ 141743 (-) |
| G217425 | NA | non-coding | upstream | 29077 | 157957 ~ 160923 (-) |
| G217473 | NA | non-coding | upstream | 38306 | 167186 ~ 167430 (-) |
| CI01000051_00394082_00407612 | MTMR9 | other | upstream | 266351 | 392720 ~ 407612 (-) |
| CI01000051_00560810_00563417 | NA | other | upstream | 433316 | 560768 ~ 563417 (-) |
| CI01000051_01785489_01787612 | IGFBP1A | other | upstream | 1580418 | 1784416 ~ 1787760 (-) |
