Gene
RNA
| Item | Value |
|---|---|
| gene id | G217082 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 129044 ~ 129591 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU246265 | False | 548 | lncRNA | 0.35 | 1 | 129044 | 129591 |
| TU246266 | True | 477 | lncRNA | 0.36 | 1 | 129115 | 129591 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000051_00094391_00124007 | SNX17 | coding | upstream | 4884 | 94391 ~ 124160 (+) |
| CI01000051_00074000_00080983 | EIF2B4 | coding | upstream | 47982 | 74000 ~ 81062 (+) |
| CI01000051_00017447_00029701 | TAB2 | coding | upstream | 99243 | 17447 ~ 29801 (+) |
| CI01000051_00147585_00164301 | NA | coding | downstream | 17994 | 147585 ~ 165049 (+) |
| CI01000051_00194573_00205676 | NA | coding | downstream | 64236 | 193827 ~ 205735 (+) |
| CI01000051_00414617_00476423 | XKR6B, XKR6 | coding | downstream | 285026 | 414617 ~ 476423 (+) |
| CI01000051_00487642_00497395 | CCM2 | coding | downstream | 358051 | 487642 ~ 498310 (+) |
| CI01000051_00514656_00517593 | ENPP5 | coding | downstream | 384224 | 513815 ~ 518014 (+) |
| G217077 | NA | non-coding | upstream | 45540 | 73814 ~ 83504 (+) |
| G217097 | NA | non-coding | upstream | 93651 | 35164 ~ 35393 (+) |
| G217096 | NA | non-coding | upstream | 94187 | 34436 ~ 34857 (+) |
| G217093 | NA | non-coding | downstream | 999 | 130590 ~ 131462 (+) |
| G217110 | NA | non-coding | downstream | 41887 | 171478 ~ 171725 (+) |
| G217111 | NA | non-coding | downstream | 43229 | 172820 ~ 173271 (+) |
| G217112 | NA | non-coding | downstream | 43917 | 173508 ~ 173776 (+) |
| G217113 | NA | non-coding | downstream | 44862 | 174453 ~ 174759 (+) |
| G217075 | NA | other | downstream | 194874 | 324465 ~ 384128 (+) |
| CI01000051_00638200_00720543 | CDC42BPB | other | downstream | 507999 | 637590 ~ 720669 (+) |
| CI01000051_02060996_02061735 | NA | other | downstream | 1930396 | 2060534 ~ 2062355 (+) |
| G218981 | NA | other | downstream | 3115852 | 3245443 ~ 3246873 (+) |
| CI01000051_04374052_04393328 | NA | other | downstream | 4244819 | 4372658 ~ 4393677 (+) |
