G217425


Basic Information

Item Value
gene id G217425
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 157957 ~ 160923 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU246667
CTTGCTCTATTATCCCTACATTATTGTATCAGCCATTTAGCCATTATCTGGCACAAAAACAACAAGAATCTCAGTACTAAATTGAACAGCTAAATTTACATGAATTTCAACTAATACAGCTACAAAAAAAATCTATATCTGAGTTGAAACATGGTTAACAGAGGCACTGTTTTACTGCAGCTGAGCTCCTCTCAGACTACTGAACATCTATTTAATTTAGCAGCGGCTCAACTTTTAATTTGTTAACTGGACTTACAATTGGCCAGATCTTCCAGCTGTATGTTCCGTACTTCGGGAGGTTCAGTTTGTGGCCGGCACCAGCCATTACGGCACAACGACATGGGCACGACCCCGTAGACATACGTCAACATGAGAGGCACCCCCACACCTTGAAACACAGGAGATTTACTCAATTAGAATTGATTATGAAGCTATTCCAAAAGAGTATTATTATTAATTACAGAAAATGTTGTATAAGTGTACAAGTCCCTACTGTGTGCAAACGAATACATCAAATCACAGACATATTTACCTCAAAAGTGAACTTATTTTCAGATGAATCTGAAGGAAAAGGGCAGTAATTCACATAATGGCAGCGTAAATACACAGAAGCATAATGCTAGCAGCAAAGACAAGGACAACACGCAATAAAGGAGACAAAAGGCCATGATCCTCCCGTTCTGCATGAGAACAGTGTGGCATTGTTGACGGGGACATTGTAGGGGACAAGGCCCCACTGTGGCTCTCCTGAAGAGAGGTCAGAGCTGCAGAACAGACAGGGCTATTCAGAGGGGAGAATGAGAGGGAACACAGGCTCTGGGCTTGCGAGGAGAGCACAGAGTGGTGAATGTGCTGCGCTCAGGTCTTCACGCTACGCCATGGAGATCGCTCTGACATTTTAGTTGCAGCCGGCTGCTGTAATCTTCCCCTCCCCGCTCCAACTCTCACAGGAGTGCCAAAGCAGAAGATAGATGAGTCATCAGAGACGACCGGGGCAGTTGCTGTGTGTGTGTGTGTGTACGTGTATGAATGAAACAGCTGCATGCACATATGTAGGCTAAAATGTGCGCAATATGGGTGTTAAAGGATTAGTTCACCTACCCCCCACTCAAAAAAAAGGTTATTTTCCCTGAAGTCATTCCAAAGCTATATGATATTCTTGCTTTTGTAAAACACAAAATGAGAAATCTTTGATAATGTGCCAGTTGCTCTTTTCTATGGAAGCTTGTTTCCGCCACTGAATAAAATATAAAAAAGATATAAATTGCGAGTTTACATGTCGCAATTCTGACTTTTTTTTTGCAGAATTGTGTGATATAAAGTCGCAAATGCAAGTTATAAAGTCAGAATTGCAAGATATAAAGTCGCAAATGCAAGTTATAAAGTCAGAATTGCAAGATATAGTCGCAAATGCGAGTTATAAAGTCAGAATTGAGTTAAAGTCAGAATTGTGCGTTATAAAGTCAAAATTGCGTGATATAAAGTCGCAAATGCGAGTTATAAAGTCAGAATTGCAAGTTTATAATGTGCAATTGTATTTATAACTCACAATTCTGACTATTTCTCACAATTTTGAGTTTATATCTTGCAATTCTGACATTATAACTCGCAATTCTGCCTTTATTTCTTGCAATTGTGAGTTTATAACACGCAATTTTGAGTTTATATCTCGCAATTCTGACATTATAACTCACAATTTTGACTTTATTTCTCACAATTAAGTTTATATCTCGCAATTTTGAGAAAAGAAGGCAGAATTGCGAGATGTAAACATAAAAGTAGTCTTCCAGAGTCATGCAATATCTTTGCAAGATGAACAGATTATACATAAGTTGTTATTCACCTAAATCAACTGATTTACTGAAAAGATCTGGTTCAAAAGAACTACTCACAATGTTTCAGTAAATAATGGCTTCGATTTCAGTCTGTTTTTGGTTTTGATTTCAAAGAATGGCCAGGATGTTCTTCAATTCCCCTTTTGGGCTCCACAGAAGAAAGTCGAACAGGTTTGGAATGACATTAAATGATTTTTAGTTGAACTATCCCTTTAAACGTGTTTGTTTTCATTTCTGACTTTCTTATTCAAGGTCTCAGCTGAGAGGCAGACTTGTGTGTCTTAAAGGTGCAGTAAGCGATTTCTGAGAAACGCTGTTGAAAGTGGATCAGACCGAGCGCTACAACAAACTTGTAGCCAATCAGCAGTAGGGGGTGTGTCCACTCATGATGGGGAAGGAGAGAGAGTGAGCAAGAGGGAGATTTTAAGAAAGACTGTAGAAAGAGCTGTGGCTGAGAGACATTAGAAAAAGTCAGAGGTATATCACTGGAAAAAAAGGGTTATGATCAGGCTAGAGCTTTAAGACCTGCATTAATATTAGAAAAGCTTTCCAGTGCTGGAGAGACCTAAGCGAGAAGGCCTGAAAACAGACGCCAAGGTCCTTTCTGCTCCAGACGTGAGTAACATTGGTTTTGAGTGTGTGCTGCTGCCGACTAACAACCAGCTCTTGCTTGTATATACTCTTCTGTACTGTGTTTATTTTTTGTCACTTGTCATCTTCACTTTATTGTTTGCGAAGCTTTATTTTGCTTTGCTTCTGCTATGATAAAGAGATATCCACTCTAACAGTTTGGGGGCGGAGCAATGAAGGGAGGGGTGTGTTTGTTTGGGTTGATTTCAAATATCAACAGTGTTCAACAGTGATTCTCTGAAATCACTTACTGCACCTTTAACTAGCTTCATTTGTCTGAACTCATGGCAGAACAATCAATACAAAGAAATAACACTTACGTCAGCACCTTTACATCGCTGTAACCCAACTATACGACCACTAAAGTGCTTGTTGCCTTCTTAATATCCTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU246667 True 2857 lncRNA 0.39 2 157957 160923

Neighbor

gene id symbol gene type direction distance location
CI01000051_00131867_00138611 ZNF513 coding downstream 19167 130386 ~ 138790 (-)
CI01000051_00083434_00086769 NA coding downstream 70598 82720 ~ 87359 (-)
CI01000051_00036318_00057051 SCARA5 coding downstream 100906 36318 ~ 57051 (-)
CI01000051_00000977_00002147 NA coding downstream 155418 810 ~ 2539 (-)
CI01000051_00224709_00227613 NA coding upstream 63584 224507 ~ 227613 (-)
CI01000051_00262483_00263385 BLK coding upstream 101518 262441 ~ 263385 (-)
CI01000051_00278614_00302552 NA coding upstream 117269 278192 ~ 304373 (-)
CI01000051_00334616_00337009 SOX7 coding upstream 173130 334053 ~ 337197 (-)
CI01000051_00346827_00352024 NA coding upstream 185904 346827 ~ 352381 (-)
G217468 NA non-coding downstream 16214 141505 ~ 141743 (-)
G217411 NA non-coding downstream 28365 129112 ~ 129592 (-)
G217430 NA non-coding downstream 29077 128614 ~ 128880 (-)
G217410 NA non-coding downstream 60249 80788 ~ 97708 (-)
G217473 NA non-coding upstream 6263 167186 ~ 167430 (-)
G217427 NA non-coding upstream 9560 170483 ~ 170754 (-)
G217475 NA non-coding upstream 10339 171262 ~ 171494 (-)
G217476 NA non-coding upstream 13696 174619 ~ 174853 (-)
G217479 NA non-coding upstream 21089 182012 ~ 182573 (-)
CI01000051_00394082_00407612 MTMR9 other upstream 234308 392720 ~ 407612 (-)
CI01000051_00560810_00563417 NA other upstream 401273 560768 ~ 563417 (-)
CI01000051_01785489_01787612 IGFBP1A other upstream 1548375 1784416 ~ 1787760 (-)

Expression


Co-expression Network