G217091


Basic Information

Item Value
gene id G217091
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 211872 ~ 213397 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU246280
CGGGCTTCCATACATCCCAAACGAATGGCATACAAGGGTTAAGAGTTTGAAAAAGTTTAAAATAAGAAGGAAACATTATAAGAAATATTAAAGATTACTCTTCCTGTTCCCACAATCAGACTGGCGACGTCCCGCAGCAGAACCGTGTCTGAGGATGCAGCTGTGAGTCCAGAGGAAGATCTCCTGTCCTTCAGCAGTGAGGACTCCGACTGAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTTGTATATATGGTTTACGGGGACTCTCCATATACGAAATGGTTTTTATACTGTACAAACTGTATATTCTATCCCCCTACGCTACCCCTACCCCTAAACCTACCATCACAGAAAACTCTCTGCATTTTTTGAATTTCAAAACAACACTTTAGTATGTTTTTTAAGCCATTTGGTTTACAGAAGGTGTCCCCATAAAACATGTTTACGTTGTTATACCCATGTCATTATACACGTGTCCTCATAAACCATGTACACAAGAACACACACACACTGACACACTCACTCTCTAACCAGCCTATCAGAACGTGTCCTGAACACAACACACCGTTCAGCTCCTGCCTCAGTGATGGACTCACTCACTCCACTGCCACTCAAAACAGTCCCACAATAAAGCATCACAGACGTGCATGATTCATAACTCTTGAATGCCAGTGTACTTGCATTATAATACAGTAAGTTCAGGGTAAGAACTTGACAATACAACATGTATAAAACTGCATGTTGTCATATTGTACTCAAGCGTTTGTGTAAGTAGATTTGCTACCTGTATAATGTAAAGAGAGTAAATCTTTTCGACGCATTGGTGCTATATTGTAGATACTTTGGTCATGTTATTTAAATATACAATAACTACAAACATGTACTTGAAAGGGAGACCAAATGTACATTCCACAGAGAACTGATGTTTGTCCTTCAGCGCAGCGTTCTTCACGACTCCCACGGCTTTCATCTGAAGTCAGATCGCTCGAGTGCTTTGTGCCGAACATGAGCCACTGTAAAGCTCTCAGACAAGTGTGATTAAACTTTACAGGATCCGCATGTGTTCGAGAACTTCACTCGAGCTGAACGTTTACAAATACGTATGTAGAACCGTTCAGGACTAACATATTGAAGCACTGTTGAATTTCAGAGCCAGGTTGTGGGTCAGGGGACGTTTGCTTAAGCAATCATTACAGAAATTATTTTCTGCGGATCATGGAATTTTGAAATTTTGAATTCGTTCTTTTTTTTAGGATCCACAATATTGCTGTCTCAAAGCCTCTCACACTGGCTTCCAAACCATAAGTGTTAGATTTATTATTATCACTATTGTTGTTTATGTTCACAGTACACTTTCACTCATCAGCCAATCTTATTTTTAAAGGTTTATTTCGCTTCAGAATTAAAATTTCCTGATAATCTACTCACCTCCATGTCATCCAAGATGTTCATGTCTTTCTTTCTTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU246280 True 1526 lncRNA 0.40 1 211872 213397

Neighbor

gene id symbol gene type direction distance location
CI01000051_00194573_00205676 NA coding upstream 6137 193827 ~ 205735 (+)
CI01000051_00147585_00164301 NA coding upstream 46823 147585 ~ 165049 (+)
CI01000051_00094391_00124007 SNX17 coding upstream 87712 94391 ~ 124160 (+)
CI01000051_00074000_00080983 EIF2B4 coding upstream 130810 74000 ~ 81062 (+)
CI01000051_00017447_00029701 TAB2 coding upstream 182071 17447 ~ 29801 (+)
CI01000051_00414617_00476423 XKR6B, XKR6 coding downstream 201220 414617 ~ 476423 (+)
CI01000051_00487642_00497395 CCM2 coding downstream 274245 487642 ~ 498310 (+)
CI01000051_00514656_00517593 ENPP5 coding downstream 300418 513815 ~ 518014 (+)
CI01000051_00638200_00720543 CDC42BPB coding downstream 424803 637590 ~ 720669 (+)
CI01000051_00729622_00743172 NA coding downstream 516225 729622 ~ 743240 (+)
G217118 NA non-coding upstream 30589 178250 ~ 181283 (+)
G217117 NA non-coding upstream 34250 177140 ~ 177622 (+)
G217116 NA non-coding upstream 34852 176351 ~ 177020 (+)
G217115 NA non-coding upstream 35793 175499 ~ 176079 (+)
G217114 NA non-coding upstream 36597 174790 ~ 175275 (+)
G217095 NA non-coding downstream 219 213616 ~ 213862 (+)
G217088 NA non-coding downstream 679 214076 ~ 215180 (+)
G217144 NA non-coding downstream 55435 268832 ~ 269200 (+)
G217146 NA non-coding downstream 65821 279218 ~ 279580 (+)
G217151 NA non-coding downstream 75446 288843 ~ 289109 (+)
G217075 NA other downstream 111068 324465 ~ 384128 (+)
CI01000051_02060996_02061735 NA other downstream 1846590 2060534 ~ 2062355 (+)
G218981 NA other downstream 3032046 3245443 ~ 3246873 (+)
CI01000051_04374052_04393328 NA other downstream 4161013 4372658 ~ 4393677 (+)

Expression


Co-expression Network