G217420


Basic Information

Item Value
gene id G217420
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 215484 ~ 216767 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU246662
AATAGCAAATGTGCTCGTGTCCATCTGTTCGCCCATAGGCGTGCTGGTCTGAAAATGAGGTGCATTGTTGGCGTGTTGCTATTTTGAGGCAACTGAAAACGACTGCGTCATTGACCAACTGAAACCTGCTCTAAAGTATTTTTTTGTTATTTAAAGAGTGTGTTAGTAATATGCGCCTATAGGCAGCTGCACAACACACGTACACTCTGCTTGTTACACACACAGGAGCAGCAGTGTAACAATGTAAAAGATTATTATTGTGTGCATAAAGATAAAAATGCCTACATGTCATAATAGATAGTCATTGCATGTATCAGAATTACCTATTTGCTGTAATGACGAATGAAATTGGCTAATTATTTGACCAATCGTGGCAGTACACACATGTATTTAAACTGACTCGTCAGGTTGAGAGTGTCTATATTCCGCCACGTAAATAGCAAATCTGTCATGGCGCGAACGCAACTGGATTTTAAAGTGAATGGGAGATTAGAATCTGATTGGTTTATTGCACATTATGCATAAAACACACCCATGACTCATTAAGAGAAGAGGTACAACCTTTTAAGTCCATGCGCCGGGTGCCAACAATTTTTTCCGTCGTTAAACTATAGCAAAAGTGGATTCGGACACGCACCTGCACCATGCGCTTCAGACCATGAGCTTAGATCATTAAAATAGCACCCACTGTCTCTATTTTAAGATGAAATACAGCTTTAATTGAAAAGTAATTTTAAAAAAATTTGATTTTTTTTTTTTTTGTTTTTTTTTGTTTTTTTCAATGGGAAAAATTTGATCATAATTATTGCATAAATATTAATTAGTACCATAAAATTCTCTCAAAGTACAAAAGAAAAAAAAGAAAAAATATTATTGAACCAAAATATATTACATTGATTTTCCTGAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAGGTTACATTTCAGGTGTTCGGTCACTTTTGACCGCGAACAACACCAGTCGGCTAGCACTGCTTATTTACCCTCTGTTTTCCCCCCACATGCTAATCTTGAAACCTGCCAGACTGAATAATGTACATAATTGCTAATCTCATTGTGTTGTATACAAATAAAATGCTCGAAAAAGAATATCTAACTGAATTATTGTTTATAATTAAGAATATTAAGATGCCATAATCCTCATGATGAAAAGTGCATGCATATGTTTTTGTTTTTATGCTCTCAGTTCATGTTTATTCTCTTAAATTAGATGTTTTTGTTATCTTCTATTTCTCCTTAACAGTTTTAATAAAGATAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246662 True 1284 lncRNA 0.34 1 215484 216767

Neighbor

gene id symbol gene type direction distance location
CI01000051_00131867_00138611 ZNF513 coding downstream 76694 130386 ~ 138790 (-)
CI01000051_00083434_00086769 NA coding downstream 128125 82720 ~ 87359 (-)
CI01000051_00036318_00057051 SCARA5 coding downstream 158433 36318 ~ 57051 (-)
CI01000051_00000977_00002147 NA coding downstream 212945 810 ~ 2539 (-)
CI01000051_00224709_00227613 NA coding upstream 7740 224507 ~ 227613 (-)
CI01000051_00262483_00263385 BLK coding upstream 45674 262441 ~ 263385 (-)
CI01000051_00278614_00302552 NA coding upstream 61425 278192 ~ 304373 (-)
CI01000051_00334616_00337009 SOX7 coding upstream 117286 334053 ~ 337197 (-)
CI01000051_00346827_00352024 NA coding upstream 130060 346827 ~ 352381 (-)
G217419 NA non-coding downstream 360 214080 ~ 215124 (-)
G217424 NA non-coding downstream 1632 213614 ~ 213852 (-)
G217423 NA non-coding downstream 2114 211892 ~ 213370 (-)
G217489 NA non-coding downstream 8190 206849 ~ 207294 (-)
G217488 NA non-coding downstream 11421 203436 ~ 204063 (-)
G217417 NA non-coding upstream 102 216869 ~ 218155 (-)
G217553 NA non-coding upstream 81283 298050 ~ 298268 (-)
CI01000051_00394082_00407612 MTMR9 non-coding upstream 175953 392720 ~ 407612 (-)
G217532 NA non-coding upstream 180251 397018 ~ 397424 (-)
G217531 NA non-coding upstream 197079 413846 ~ 414972 (-)
CI01000051_00560810_00563417 NA other upstream 345429 560768 ~ 563417 (-)
CI01000051_01785489_01787612 IGFBP1A other upstream 1492531 1784416 ~ 1787760 (-)

Expression


Co-expression Network