G217075


Basic Information

Item Value
gene id G217075
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 324465 ~ 384128 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU246252
TAAAAAAAAAAAAAAAAAGGTTTTGAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAGAGAGAAAAGAAACTCAGAAAGAGAGCAGAATTTGGGAAGGCAAGTTTTAGGAGCTGCGACATTCATTTTTGGATTTTTATATCTGTTTGGTTTATTTTTCCTGGAGACATAATGATCCTATCTCACTAAATGCAAAGCACAAGCGGATCACGTCGGGTTTAAACCAATTCCTTTTCTTCTTTTCCAACATTTACCTTTCAAAATACCTGTGCGGTTTTCAACCCTGACTAGAAAAGAGACCAGACCTCTTTGTATAATCTGCAGTTATACATACATAGCCTGTGCTAGTCCATACAGATGACACAAAAGAGAACAGGAATATGACTATTTACAGACCATGGATCTCTCTTCTGCATCACTATAAATCTTTGTAATATGTACATATTTCCATTGTCCATGAGCAGACTCAGTTGGCCTGAGCGATGCAGGAGTCTGAGCCGATGAAGTTGAGCATCGTCTGGACTAACTCCGGCAGATCGTAGTCGTGCTTCCAGCCCCAGTCATTGCGGGCGTTGGAGTCATCAAAGTTCATGGGCCAGCTGTCAGCTACGTAGACGAAAACAAGATCACACTCAATATTTTGCACCATTTATTTACACCAAATGTTTGCTGATGGTTGTGAGGCTCATACCTATAGCCTGTCGTACAGAGTCGATCTCATACGTGACCTGAAGGTCAGGCAGCTGTTTCTGGACTTCATTTGCAAGTTCCTCTGGAGTGAAGCTCATGGCATTGATGTTGTAGGTGCGCATACTGAGCGTTTCCGCCGGCGCCTCCATCACCTCCAGCGTGGCCCGCAAACAGTCATCAATGTACATCATGGGCAGCCGCGTATCTGGCTTCAAGTTGCACTCAAATTTGCCGGTCTTGACGGCGTCGTGGAAAATCTGCACAGCA
>TU246250
GAAAAAAATATATAGGGATAGAAAAATGTAATCTGGAAATGCTGCAAGCCAGATTTGAACTTGCAACACCCACATAAGCACCAGAGCACAATGCTAACCACTAAGCCATGGCTCCAACATATTTACACTATCATTGAAAAGTTTAGGTCAGTAAATATTTTTTTTATTATTATTATTTTGAAAGAAATTAATACTTTTATTTAGCAGGGACGCATTAAATTGATCAAAAGTTACAGTAAAGACATTCATAATGTTACACTTTTTTTTTTTTTTTTTTTTTTTTTGTTAAAGATAAAAAAGCTTTATTGACACAAGTTTAGTGATCATAAGAACAAAACGTGTGGATGCAAAGCTTGACTAAAAAATAATAATTTAAATTTGTTTCCCACTCTCCCCTTCATATGGGATAATATATTCCCTGTGGGAAAACATTAATGGGAAAATGCAAGATATGAGAGAAATTGCATTTAACAAAAAGTGTGGAGCAAGTGCGAAACTTGCAATTTATTTGTGAGCAGTCTGAATAAATAGATAGTGCACAAGAGAGGGAAAGCAACCAAGAGGGATATGATAACGTCATTTATCATGACGACCCCCACTTTCCCTGAGGACCTGCATTTGAGTCCCACCCTGTTCAAACCACACAATCTTTTGTGTGTTTATTTTAGAATGGGCTGCAGCTGCTGGAACTATTCCTATTACTTTTATTCCCATTAGTGTGAACACGGCCTTTTCCCTCATATATTATCTTCTTCTGTAAAGGTACAGTACAATTATTTATCTTAAATAGAAAAAGAAAAAGAAAAAAAAAAAAAAGAGAGAAAAGAAACTCAGAAAGAGAGCAGAATTTGGGAAGGCAAGTTTTAGGAGCTGCGACATTCATTTTTGGATTTTTATATCTGTTTGGTTTATTTTTCCTGGAGACATAATGATCCTATCTCACTAAATGCAAAGCACAAGCGGATCACGTCGGGTTTAAACCAATTCCTTTTCTTCTTTTCCAACATTTACCTTTCAAAATACCTGTGCGGTTTTCAACCCTGACTAGAAAAGAGACCAGACCTCTTTGTATAATCTGCAGTTATACATACATAGCCTGTGCTAGTCCATACAGATGACACAAAAGAGAACAGGAATATGACTATTTACAGACCATGGATCTCTCTTCTGCATCACTATAAATCTTTGTAATATGTACATATTTCCATTGTCCATGAGCAGACTCAGTTGGCCTGAGCGATGCAGGAGTCTGAGCCGATGAAGTTGAGCATCGTCTGGACTAACTCCGGCAGATCGTAGTCGTGCTTCCAGCCCCAGTCATTGCGGGCGTTGGAGTCATCAAAGTTCATGGGCCAGCTGTCAGCTACGTAGACGAAAACAAGATCACACTCAATATTTTGCACCATTTATTTACACCAAATGTTTGCTGATGGTTGTGAGGCTCATACCTATAGCCTGTCGTACAGAGTCGATCTCATACGTGACCTGAAGGTCAGGCAGCTGTTTCTGGACTTCATTTGCAAGTTCCTCTGGAGTGAAGCTCATGGCATTGATGTTGTAGGTGCGCATACTGAGCGTTTCCGCCGGCGCCTCCATCACCTCCAGCGTGGCCCGCAAACAGTCATCAATGTACATCATGGGCAGCCGCGTATCTGGCTTCAAGTTGCACTCAAATTTGCCGGTCTTGACGGCGTCGTGGAAAATCTGCACAGCA
>TU246251
GAAAAAAATATATAGGGATAGAAAAATGTAATCTGGAAATGCTGCAAGCCAGATTTGAACTTGCAACACCCACATAAGCACCAGAGCACAATGCTAACCACTAAGCCATGGCTCCAACATATTTACACTATCATTGAAAAGTTTAGGTCAGTAAATATTTTTTTTATTATTATTATTTTGAAAGAAATTAATACTTTTATTTAGCAGGGACGCATTAAATTGATCAAAAGTTACAGTAAAGACATTCATAATGTTACACTTTTTTTTTTTTTTTTTTTTTTTTTGTTAAAGATAAAAAAGCTTTATTGACACAAGTTTAGTGATCATAAGAACAAAACGTGTGGATGCAAAGCTTGACTAAAAAATAATAATTTAAATTTGTTTCCCACTCTCCCCTTCATATGGGATAATATATTCCCTGTGGGAAAACATTAATGGGAAAATGCAAGATATGAGAGAAATTGCATTTAACAAAAAGTGTGGAGCAAGTGCGAAACTTGCAATTTATTTGTGAGCAGTCTGAATAAATAGATAGTGCACAAGAGAGGGAAAGCAACCAAGAGGGATATGATAACGTCATTTATCATGACGACCCCCACTTTCCCTGAGGACCTGCATTTGAGTCCCACCCTGTTCAAACCACACAATCTTTTGTGTGTTTATTTTAGAATGGGCTGCAGCTGCTGGAACTATTCCTATTACTTTTATTCCCATTAGTGTGAACACGGCCTTTTCCCTCATATATTATCTTCTTCTGTAAAGGTACAGTACAATTATTTATCTTAAATAGAAAAAGAAAAAGAAAAAAAAAAAAAAGAGAGAAAAGAAACTCAGAAAGAGAGCAGAATTTGGGAAGGCAAGTTTTAGGAGCTGCGACATTCATTTTTGGATTTTTATATCTGTTTGGTTTATTTTTCCTGGAGACATAATGATCCTATCTCACTAAATGCAAAGCACAAGCGGATCACGTCGGGTTTAAACCAATTCCTTTTCTTCTTTTCCAACATTTACCTTTCAAAATACCTGTGCGGTTTTCAACCCTGACTAGAAAAGAGACCAGACCTCTTTGTATAATCTGCAGTTATACATACATAGCCTGTGCTAGTCCATACAGATGACACAAAAGAGAACAGGAATATGACTATTTACAGACCATGGATCTCTCTTCTGCATCACTATAAATCTTTGTAATATGTACATATTTCCATTGTCCATGAGCAGACTCAGTTGGCCTGAGCGATGCAGGAGTCTGAGCCGATGAAGTTGAGCATCGTCTGGACTAACTCCGGCAGATCGTAGTCGTGCTTCCAGCCCCAGTCATTGCGGGCGTTGGAGTCATCAAAGTTCATGGGCCAGCTGTCAGCTACCCTGTCGTACAGAGTCGATCTCATACGTGACCTGAAGGTCAGGCAGCTGTTTCTGGACTTCATTTGCAAGTTCCTCTGGAGTGAAGCTCATGGCATTGATGTTGTAGGTGCGCATACTGAGCGTTTCCGCCGGCGCCTCCATCACCTCCAGCGTGGCCCGCAAACAGTCATCAATGTACATCATGGGCAGCCGCGTATCTGGCTTCAAGTTGCACTCAAATTTGCCGGTCTTGACGGCGTCGTGGAAAATCTGCACAGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU246252 False 958 TUCP 0.43 3 324465 384128
TU246250 False 1714 lncRNA 0.39 2 356879 384128
TU246251 True 1627 lncRNA 0.39 3 356879 384128

Neighbor

gene id symbol gene type direction distance location
CI01000051_00194573_00205676 NA coding upstream 151144 193827 ~ 205735 (+)
CI01000051_00147585_00164301 NA coding upstream 191830 147585 ~ 165049 (+)
CI01000051_00094391_00124007 SNX17 coding upstream 232719 94391 ~ 124160 (+)
CI01000051_00074000_00080983 EIF2B4 coding upstream 275817 74000 ~ 81062 (+)
CI01000051_00017447_00029701 TAB2 coding upstream 327078 17447 ~ 29801 (+)
CI01000051_00414617_00476423 XKR6B, XKR6 coding downstream 30489 414617 ~ 476423 (+)
CI01000051_00487642_00497395 CCM2 coding downstream 103514 487642 ~ 498310 (+)
CI01000051_00514656_00517593 ENPP5 coding downstream 129687 513815 ~ 518014 (+)
CI01000051_00638200_00720543 CDC42BPB coding downstream 254072 637590 ~ 720669 (+)
CI01000051_00729622_00743172 NA coding downstream 345494 729622 ~ 743240 (+)
G217153 NA non-coding upstream 64631 291962 ~ 292248 (+)
G217151 NA non-coding upstream 67770 288843 ~ 289109 (+)
G217146 NA non-coding upstream 77299 279218 ~ 279580 (+)
G217144 NA non-coding upstream 87679 268832 ~ 269200 (+)
G217088 NA non-coding upstream 141699 214076 ~ 215180 (+)
G217086 NA non-coding downstream 8508 392636 ~ 394298 (+)
G217092 NA non-coding downstream 20560 404688 ~ 405457 (+)
G217189 NA non-coding downstream 69507 453635 ~ 454168 (+)
G217089 NA non-coding downstream 138068 522196 ~ 524380 (+)
G217074 NA non-coding downstream 142568 526696 ~ 528004 (+)
CI01000051_02060996_02061735 NA other downstream 1675859 2060534 ~ 2062355 (+)
G218981 NA other downstream 2861315 3245443 ~ 3246873 (+)
CI01000051_04374052_04393328 NA other downstream 3990282 4372658 ~ 4393677 (+)
G219803 NA other downstream 4530846 4914974 ~ 5052033 (+)

Expression


Co-expression Network