XLOC_000970 (mdh1b)


Basic Information

Item Value
gene id XLOC_000970
gene name mdh1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6218632 ~ 6225285 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001537
GCGCTTGGGTTTGGACAAACATGGCGAAGTTTGTTCTTGCGGGAAAGGCTGATTGTCCTTATTATGCAAAGGCTGAGCTTCTTGCTGATGTGCTGCAAAGAAACCTGCCTGATTTTCACATCCACAAGATCCCTGTGCCGCCCGATGACTGGAAGAAATGGCTGGAGGACACCTGCGCATCTATTGGCTGGAAACACTCAAGCTCTCCTCTAGTATGGAGGGAGCTGATTGATCGTGGTGGGAAAGGCATGCTGCTCGGAGGATTCAGTGATTTCCTGGAGCATGCTCAGGGTTATTATAACATCACCTCAGACATGAACTCTGATCTGATGCTTAAAATTGCAGAAGAGAATCAAGCGACCAAAGAGCTGTGTATGGAGGAGGAAGTTCATCGACTCAAGTCTCTCAGGCCTCTGCACATCTGGATCAGCAGTGCTCTGAACCCCGTCTGCTACAGCCTCATTCCTCACCTGTTCACCCCGGGGCTGTTTTCAGGTCTGCCCATCTTCAGCCTTCACCTCATGGACACCAGCGGTTCTGAGGAAATGTTGCAAGCACTCAAGATGGAAACGGTGGACCTCGCCATACCTCGGCTCCATGAACCTGCAGGTGAATATAATGATGAGCAGAATGACAAGGACCAGGTAGCGGAACATTTTCATCGCTATGGGCAACTCATCGAGACGAACGCGCAGAAAGACGTAAGGGTGCTAGTGGCAGGAGATTTCTTCATTAATATGAAGTGTTCACTGTTGATTGAAAACGCACCCTCTATTGATCCGCGCAACTTTGTGGCAATGACAACGCAACTGGAATACGAGGCCAGAACTCAGCTTGCACAGAAGCTGTCAGTCAAAACATCAGaCATCACTAATGTTATTGTGTGGGGAAACATCAGTGGCAGTTTCCATATTGACCTACAGAGGGCGAAGGTTTTCAGATATGATGGCGCAATTCGGGGACCAGATGGTTTTTCTCAGCACGTTATGGAAATGATTTATGATTGGAAATGGCTGAAGACAGACTTTAGGAGTTTATTACATAAACATCGAGCCACAATTTCATCAAAGACCAACAAGGCCACAGCGATATCAACCACTAATGCAATATTGGCCATTTTAAAAGCCTGGAATAATGCAGAATCTCCAGAGGAAGTCTTCTCGTTGGGTGTGCTCAGTACAGGGCAGTTTGGGATTCCAGCAGGTCTGGTGTTTTCGATGCCTGTCAGTTTTACAGATGGTCATTGGTCAGTGCGGTCTGATGTTATTGTTACAGATGAGTTAAGGGTAAATCTTGACGCTTGTGCAGATGAACTTCGAATGGAAAGAGACATGGCTGCTAAAACACTGAAGAATGATGCATGACCTCTCTCCAGAAGCTGAAACGTCACTATTCTACAATACTATGTTAATTAAACTAACTATTattaactaaaattaataatTGTGTTAACTAGACAATATTTCAATGACAAGCCTGATGAATATAgcttattaaaaaaatcaatcagCTTAGTTCTT
>TCONS_00001538
TAACATCACCTCAGACATGAACTCTGATCTGATGCTTAAAATTGCAGAAGAGAATCAAGCGACCAAAGAGCTGTGTATGGAGGAGGAAGTTCATCGACTCAAGTCTCTCAGGCCTCTGCACATCTGGATCAGCAGTGCTCTGAACCCCGTCTGCTACAGCCTCATTCCTCACCTGTTCACCCCGGGGCTGTTTTCAGGTCTGCCCATCTTCAGCCTTCACCTCATGGACACCAGCGGTTCTGAGGAAATGTTGCAAGCACTCAAGATGGAAACGGTGGACCTCGCCATACCTCGGCTCCATGAAAATGACAAGGACCAGGTAGCGGAACATTTTCATCGCTATGGGCAACTCATCGAGACGAACGCGCAGAAAGACGTAAGGGTGCTAGTGGCAGGAGATTTCTTCATTAATATGAAGTGTTCACTGTTGATTGAAAACGCACCCTCTATTGATCCGCGCAACTTTGTGGCAATGACAACGCAACTGGAATACGAGGCCAGAACTCAGCTTGCACAGAAGCTGTCAGTCAAAACATCAGaCATCACTAATGTTATTGTGTGGGGAAACATCAGTGGCAGTTTCCATATTGACCTACAGAGGGCGAAGGTTTTCAGATATGATGGCGCAATTCGGGGACCAGATGGTTTTTCTCAGCA
>TCONS_00003321
GGACAAACATGGCGAAGTTTGTTCTTGCGGGTTGGAAAGGCTGATTGTCCTTATTATGCAAAGGCTGAGCTTCTTGCTGATGTGCTGCAAAGAAACCTGCCTGATTTTCACATCCACAAGATCCCTGTGCCGCCCGATGACTGGAAGAAATGGCTGGAGGACACCTGCGCATCTATTGGCTGGAAACACTCAAGCTCTCCTCTAGTATGGAGGGAGCTGATTGATCGTGGTGGGAAAGGCATGCTGCTCGGAGGATTCAGTGATTTCCTGGAGCATGCTCAGGGTTATTATAACATCACCTCAGACATGAACTCTGATCTGATGCTTAAAATTGCAGAAGAGAATCAAGCGACCAAAGAGCTGTGTATGGAGGAGGAAGTTCATCGACTCAAGTCTCTCAGGCCTCTGCACATCTGGATCAGCAGTGCTCTGAACCCCGTCTGCTACAGCCTCATTCCTCACCTGTTCACCCCGGGGCTGTTTTCAGGTCTGCCCATCTTCAGCCTTCACCTCATGGACACCAGCGGTTCTGAGGAAATGTTGCAAGCACTCAAGATGGAAACGGTGGACCTCGCCATACCTCGGCTCCATGAAAATGACAAGGACCAGGTAGCGGAACATTTTCATCGCTATGGGCAACTCATCGAGACGAACGCGCAGAAAGACGTAAGGGTGCTAGTGGCAGGAGATTTCTTCATTAATATGAAGTGTTCACTGTTGATTGAAAACGCACCCTCTATTGATCCGCGCAACTTTGTGGCAATGACAACGCAACTGGAATACGAGGCCAGAACTCAGCTTGCACAGAAGCTGTCAGTCAAAACATCAGaCATCACTAATGTTATTGTGTGGGGAAACATCAGTGGCAGTTTCCATATTGACCTACAGAGGGCGAAGGTTTTCAGATATGATGGCGCAATTCGGGGACCAGATGGTTTTTCTCAGCA
>TCONS_00003322
GCGCTTGGGTTTGGACAAACATGGCGAAGTTTGTTCTTGCGGGAAAGGCTGATTGTCCTTATTATGCAAAGGCTGAGCTTCTTGCTGATGTGCTGCAAAGAAACCTGCCTGATTTTCACATCCACAAGATCCCTGTGCCGCCCGATGACTGGAAGAAATGGCTGGAGGACACCTGCGCATCTATTGGCTGGAAACACTCAAGCTCTCCTCTAGTATGGAGGGAGCTGATTGATCGTGGTGGGAAAGGCATGCTGCTCGGAGGATTCAGTGATTTCCTGGAGCATGCTCAGGGTTATTATAACATCACCTCAGACATGAACTCTGATCTGATGCTTAAAATTGCAGAAGAGAATCAAGCGACCAAAGAGCTGTGTATGGAGGAGGAAGTTCATCGACTCAAGTCTCTCAGGCCTCTGCACATCTGGATCAGCAGTGCTCTGAACCCCGTCTGCTACAGCCTCATTCCTCACCTGTTCACCCCGGGGCTGTTTTCAGGTCTGCCCATCTTCAGCCTTCACCTCATGGACACCAGCGGTTCTGAGGAAATGTTGCAAGCACTCAAGATGGAAACGGTGGACCTCGCCATACCTCGGCTCCATGAAAATGACAAGGACCAGGTAGCGGAACATTTTCATCGCTATGGGCAACTCATCGAGACGAACGCGCAGAAAGACGTAAGGGTGCTAGTGGCAGGAGATTTCTTCATTAATATGAAGTGTTCACTGTTGATTGAAAACGCACCCTCTATTGATCCGCGCAACTTTGTGGCAATGACAACGCAACTGGAATACGAGGCCAGAACTCAGCTTGCACAGAAGCTGTCAGTCAAAACATCAGaCATCACTAATGTTATTGTGTGGGGAAACATCAGTGGCAGTTTCCATATTGACCTACAGAGGGCGAAGGTTTTCAGATATGATGGCGCAATTCGGGGACCAGATGGTTTTTCTCAGCA
>TCONS_00001539
GGACAAACATGGCGAAGTTTGTTCTTGCGGGTTGGAAAGGCTGATTGTCCTTATTATGCAAAGGCTGAGCTTCTTGCTGATGTGCTGCAAAGAAACCTGCCTGATTTTCACATCCACAAGATCCCTGTGCCGCCCGATGACTGGAAGAAATGGCTGGAGGACACCTGCGCATCTATTGGCTGGAAACACTCAAGCTCTCCTCTAGTATGGAGGGAGCTGATTGATCGTGGTGGGAAAGGCATGCTGCTCGGAGGATTCAGTGATTTCCTGGAGCATGCTCAGGGTTATTATAACATCACCTCAGACATGAACTCTGATCTGATGCTTAAAATTGCAGAAGAGAATCAAGCGACCAAAGAGCTGTGTATGGAGGAGGAAGTTCATCGACTCAAGTCTCTCAGGCCTCTGCACATCTGGATCAGCAGTGCTCTGAACCCCGTCTGCTACAGCCTCATTCCTCACCTGTTCACCCCGGGGCTGTTTTCAGGTCTGCCCATCTTCAGCCTTCACCTCATGGACACCAGCGGTTCTGAGGAAATGTTGCAAGCACTCAAGATGGAAACGGTGGACCTCGCCATACCTCGGCTCCATGAAGTAACTATCCATTCAGACCAGATGCTAGCATTCCAGGAAGCCCACTTCATTATTTTTTTGGATGACCAGCAGCCTGCAGGTGAATATAATGATGAGCAGAATGACAAGGACCAGGTAGCGGAACATTTTCATCGCTATGGGCAACTCATCGAGACGAACGCGCAGAAAGACGTAAGGGTGCTAGTGGCAGGAGATTTCTTCATTAATATGAAGTGTTCACTGTTGATTGAAAACGCACCCTCTATTGATCCGCGCAACTTTGTGGCAATGACAACGCAACTGGAATACGAGGCCAGAACTCAGCTTGCACAGAAGC
>TCONS_00001540
GCGCTTGGGTTTGGACAAACATGGCGAAGTTTGTTCTTGCGGGAAAGGCTGATTGTCCTTATTATGCAAAGGCTGAGCTTCTTGCTGATGTGCTGCAAAGAAACCTGCCTGATTTTCACATCCACAAGATCCCTGTGCCGCCCGATGACTGGAAGAAATGGCTGGAGGACACCTGCGCATCTATTGGCTGGAAACACTCAAGCTCTCCTCTAGTATGGAGGGAGCTGATTGATCGTGGTGGGAAAGGCATGCTGCTCGGAGGATTCAGTGATTTCCTGGAGCATGCTCAGGGTTATTATAACATCACCTCAGACATGAACTCTGATCTGATGCTTAAAATTGCAGAAGAGAATCAAGCGACCAAAGAGCTGTGTATGGAGGAGGAAGTTCATCGACTCAAGTCTCTCAGGCCTCTGCACATCTGGATCAGCAGGTGGAGGATGTTTAATCAAGACtcttctgtgttatatttcaaaAGCATGACAATTAACTTAATAAAACCATCTTTCAGTGCTCTGAACCCCGTCTGCTACAGCCTCATTCCTCACCTGTTCACCCCGGGGCTGTTTTCAGGTCTGCCCATCTTCAGCCTTCACCTCATGGACACCAGCGGTTCTGAGGAAATGTTGCAAGCACTCAAGATGGAAACGGTGGACCTCGCCATACCTCGGCTCCATGAAGTAACTATCCATTCAGACCAGATGCTAGCATTCCAGGAAGCCCACTTCATTATTTTTTTGGATGACCAGCAGCCTGCAGGTGAATATAATGATGAGCAGAATGACAAGGACCAGGTAGCGGAACATTTTCATCGCTATGGGCAACTCATCGAGACGAACGCGCAGAA

Function

symbol description
mdh1b Predicted to enable L-malate dehydrogenase activity. Predicted to be involved in NADH metabolic process; dicarboxylic acid metabolic process; and tricarboxylic acid cycle. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human MDH1B (malate dehydrogenase 1B).

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006107 oxaloacetate metabolic process biological_process
GO:0006108 malate metabolic process biological_process
GO:0006734 NADH metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0016615 malate dehydrogenase activity molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0003824 catalytic activity molecular_function
GO:0030060 L-malate dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-384 Predicted to enable L-malate dehydrogenase activity. Predicted to be involved in NADH metabolic process; dicarboxylic acid metabolic process; and tricarboxylic acid cycle. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human MDH1B (malate dehydrogenase 1B).

Ensembl:

ensembl_id ENSDARG00000018008

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001537 False 1520 mRNA 0.45 10 6218632 6225285
TCONS_00001538 False 657 processed_transcript 0.49 4 6220881 6222249
TCONS_00003321 False 947 lncRNA 0.49 7 6220881 6225273
TCONS_00003322 False 955 lncRNA 0.49 7 6220881 6225285
TCONS_00001539 False 910 lncRNA 0.49 5 6221552 6225273
TCONS_00001540 True 847 lncRNA 0.48 4 6221701 6225285

Neighbor

gene id symbol gene type direction distance location
XLOC_000969 NA coding downstream 44931 6159631 ~ 6173701 (-)
XLOC_000968 NA coding downstream 132880 6060026 ~ 6085752 (-)
XLOC_000967 pard3ba coding downstream 189756 5798548 ~ 6028876 (-)
XLOC_000966 nrp2a coding downstream 472602 5606460 ~ 5746030 (-)
XLOC_000965 fn1b coding downstream 675567 5504128 ~ 5543065 (-)
XLOC_000971 NA coding upstream 172914 6398199 ~ 6400326 (-)
XLOC_000972 klf7a coding upstream 178266 6403551 ~ 6494384 (-)
XLOC_000973 CU571320.1 coding upstream 228119 6453404 ~ 6453519 (-)
XLOC_000974 CABZ01075316.1 coding upstream 916754 7142039 ~ 7142143 (-)
XLOC_000975 NA coding upstream 1319764 7545049 ~ 7554339 (-)
XLOC_000962 NA non-coding downstream 866190 5350872 ~ 5352442 (-)
XLOC_000961 NA non-coding downstream 1021911 5195078 ~ 5196721 (-)
XLOC_000960 NA non-coding downstream 1064804 5148593 ~ 5153828 (-)
XLOC_000980 NA non-coding upstream 1474738 7700023 ~ 7701856 (-)

Expression


Co-expression Network