XLOC_009702


Basic Information

Item Value
gene id XLOC_009702
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9504373 ~ 9505519 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021889
ttaacatcaacccctaccctaaacctaaccctcactgtaatgtaaaaatattcattattgttatgcaTTGTCTCAAAAAAGATGCTGTATTGATAtgtccgcagctgtatcccttctagattTTACCCCCCACCCCATGCTGCACATTTTATATGTTTCTCTTTTCACACCATGATTTATATATGTTTGATTTAAATAGCCTTTTAGTGCGTGATATGTGAATGTAAACGTCGCGTCACACCACATCTGTGACAATATGACATTCTGACATTTCAACTTCGAGATGGGTAAGTGAAACTTCatttactacatttatttttgttgataATAGCTGAATTTTGTAAGTTACTCAATGAAAAGAAACTTTGCTATGTCGAATgagtagttcatccaaaaatgattTACTCAtctcaaatggttccaaacctgtAAATATTAGTTTCTTTCTCGTGTCGAACGATGATGAAGGTATTCTGAAGACATGTGAAAACTTGCTGATTTTTatagtaggagaaacaaatactgtgaaagttacatggctacaggtttccagctttgatcaaaaaatgtttgtgtttaCGGACGAAAAAAAGGCAAAGAGGTTAAGAACAAGTGGAGTTATCTCAGTGGAGGGTAAGTGGAACCATCACTTAAAGTATgctattgtgttatttatttattcatttgttgtgttatttattcattcatttattgtgttctttattcatttatttattgtgttatttattcatttatttatttattcagaacaATCGCCTTCCACTATCATATGACGGAGAACAGAGTGTCTAAAGCCATCAAGCACACATTTCCTGCAGTCTAGGAGTGTATCTAGTCCATATTGGAGAGTATGGACAGTCAAGTGATGGGGTCTTTGCTGGCTTACCCATAGCACAGGCATCGGATGCAAAAAAGTTGGAGGTTCCAGATGATCAGCAGATAGTTTCAGGAGCAGAGCATCTGGGGAACGCAGCTCATGCGGCTTTACCCTGGTCGGGATCGGGTCAACACAACCATGCAGCAAGTGTGGTGGAAAATAGCCTTGGCTGTTTATCATCTCACTGGAGGATCCTGCAGATTAGGATCAACATACATTGTGactaaataaagattttttttatgtaca

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048747 muscle fiber development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:1990399 epithelium regeneration biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0048589 developmental growth biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0031099 regeneration biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021889 True 1147 lncRNA 0.37 1 9504373 9505519

Neighbor

gene id symbol gene type direction distance location
XLOC_009701 pimr208 coding upstream 2219 9495583 ~ 9502154 (+)
XLOC_009700 ice1 coding upstream 84015 9400661 ~ 9420358 (+)
XLOC_009698 dnah5 coding upstream 236877 9053275 ~ 9267496 (+)
XLOC_009699 CR394537.2 coding upstream 267127 9237132 ~ 9237246 (+)
XLOC_009697 NA coding upstream 537447 8966209 ~ 8966926 (+)
XLOC_009703 NA coding downstream 9807 9515326 ~ 9515807 (+)
XLOC_009704 NA coding downstream 20561 9526080 ~ 9528306 (+)
XLOC_009705 ca14 coding downstream 34514 9540033 ~ 9558103 (+)
XLOC_009706 taf2 coding downstream 75180 9580699 ~ 9606284 (+)
XLOC_009707 enpp2 coding downstream 104202 9609721 ~ 9662205 (+)
XLOC_009696 NA non-coding upstream 538534 8964889 ~ 8965839 (+)
XLOC_009691 NA non-coding upstream 1131803 8355479 ~ 8372570 (+)
XLOC_009688 NA non-coding upstream 1710605 7792721 ~ 7793768 (+)
XLOC_009712 NA non-coding downstream 506816 10012335 ~ 10016713 (+)
XLOC_009715 FP016064.1 non-coding downstream 819030 10324549 ~ 10324665 (+)
XLOC_009718 NA non-coding downstream 872812 10378331 ~ 10379821 (+)

Expression


Co-expression Network