G218734


Basic Information

Item Value
gene id G218734
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 2312097 ~ 2316726 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU248075
TTTTTTTTGAATTTGGGGTGACTTGGACAGTGAGATTCATCCTAATATGCAACACATAACATTGATGCTTTCTGCTTGGTTAGCGATTAGTATCAGTGCTTGTTGATATATTCATTGTTCATACCCCACAGATGCGAAGCATACTTGACTTACCAGTGACATTTAATCCAGTTTGCCGGTCTGAAAGGTCTGACTAAGCTGCTTCCTGGTACCTCTCTGGGGAGGCATCAGTTCTAAAAGAGATTTCTTGTTTACTTGTTGGAATGGAAATGAGAAATCAACTTAAATAGTACAAGATATTACCACCGTCAACGCTTACCCTGAATTAAAACAATGTGTGAACGACTTGGCCCTCAGTCATTTAACCTAGCGAGGAGATCAAAGTGAAGGAAAAGGTTTTGGTCTCATGATTTCTTGTCGTTTTTAGCTGCTTTTAACTTCTCCTTTATCCGTGACATTCCAGGAGGCCGATGGTAGAGTTATGGAGTGCCAGAGAACCCTTTGGGAGTCTCTCTCATTTAGGTCTGACTACATTAACCTCCACCTCTAAAGCTGAGAAGGTCTGGTCCACCTCTATAAATATTTTCCAGAATTTCTCAAATTCTTCAACGCAGACCGAGGGCGGCTTCCACTCTTGAAGTGACATCTGGTATAATTTTCGGTCGGCGTTATGCAGGGGCAAACTCAGGAAAGGGAGGGAAGAGGAAAAGGTAGTCTCGCTAGGCCGCTCTCCTGTTTTCCCTCCCTCACTCTGACTCTTTGCCCTAGGTGTGGCCAGCTGTGCTGTGAAATGTAATCCCCCCAGTTTTTTTTTCCTACATCGTTTCCCTGAGCCCCAAACCCTCCCTCTTTCTCCCATTCACAGGGTGTAATTGCAGGAGACCGTCTAAAGCTGCCACATGGCGTTCAGGAAAGACTTTGACCTGCTGTAGCTGTCAGTCAGATGGAGTGATGGAGTCTTCCTGCAGTGCTCCATTAACTTCTGCTGTTGCAACGTTTCCCCATCCCGTTTATATAGTTTACATGTGTTTTGGACTTCTTTTCAGCAACTCCATTTAGTCCTCTAGGAATGGCCACTCAGCTTTACACATTTCTTCTGATACTTCGGTTACACTGAACTGTGGACAGATATAACAAAAAAAACATTTTATAGAAGTTTTTAGGGCTGTCACGATTCCTCGATTAAATATGAGTACTTGATTTTAAGCAACCCTCCATTACAATTTATCCGCGGCAAGTAACCGGCAAAATACCGGAAGTGGCGCGTTCCATGGACAAGAATCCATGATCTGCATTATTAGACTGTTTTCCAAGGTTGCATGATGTACGAATTTAAAAACCATACTATAGCATACTATAGCATAGTGTTATTGTGAATTCACAAAAGCTGCAATTCAATTAAATATATATATATATAAAATGTTAATTTGGTAACGCAATGTGTGCCATTTCATCAGATTCATCATTTAACGCCAACACAGGGAGAATACATCAACATGTCCAAATATACGAACTGGTCATCGCGATTTCAAAATAAAAGTTCAAATCGTTGCTCTCAGTTTGCATGTTATGATGTCCACCTATTCTTGTTCAAGAAATTACATTGGCTTTAGCAGTGTAGTAAATGTTTTTATATGTGTGTTTTAAGTCATTTTAAAGGCTTAGGTCTTTGCCTAGGTCTATTTTTATTACAAAAAAAAATATCTGATTACTCGTCAAAATAATCGACCAATTACTCGATTACAAAATAATCATCAGTGACAGCCCTAGAATTTTTTACTATAATCTGTTTATAAATGTGTGTGTATATATATATATATATATATATATATATATATATATACACATAGCCTACGTTTATATTTATATATTTATACTGAACCCAAAACATTAAAAGGAAAGTTATTATAAAGTTTTACCAAGAAAATCTAGCTTTTTCCAATGATAGCCTGAAGCATAAAGCTGTGAGATTAGAGCTGGTTAGAAAGTCGACATTTATTGAGACTAATTTCAGACAACCTTCCTGCAGATCAGTCCTCTGTGGGTTTTTGCAGCCACTTTATATCAAGAAATGACAAAAGAAATGGCCATTACTGCATGTTACATAATGAGGTGACATATTAGATGATAAAATAACACCTACTCTGCCATTAACTAAAAACCAAGCTGGGTTCGTTGAAACGTAAACAGGATTTCAGAAGTCATTCCTCTGAATGAGAAGCTGCCACAGATCTTTGGAAAGTGATGTTAGGAGTCTCTTGGCTCCTGAGGGAGCTGTATTTTGTAATAGTCAGCATTAAGGCTGGAGGGTTACAGTGTGATGTAGGAATGGTTTCCATATGAGTGCTCTTGGAGTACAGTAAAGTCATCTGGGCCTCAGATGGAGTCACAGACTGCCTCGCCTTGCCTCGGCTTCACCGCTAGTAATGACGCTGTCAAAACATTGTGCCCACTCTCAGTATTTGTGTATGTCTAAGTGCACATGTGCTGTACAACGTGTTTGACTGTTTGTTCAAGAACCTGCTAGGGTGTTTGTGTATGTCTAAGTATATGTGTGTGTGTGTGTAAGAGAGGCTGGTTTTTGAGGTTGCTGCCATGTGATTTAATCATATGCTTGTAGAGTTTATGCGACGAAGTGGGTTGGCGTAGGTAGCAATTAGATAGGCAGACATGAGCATGACTGACCATCAGCTGGCTCTTTAGACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTGTCGGCTACAACTTTATCACATCCAGAGGGTCTCTTGGAGTGTGTACTCATGATAACACACTCTTCGGTTTCATTATGGTCACTAAATTCCTCCGGTGTGGACGCTGTTCTCTGTGATCAGCCGCTGCATATCTTTGCCAGTTTACGGCTCTTTGTTTGCGCTCGAAACAATAGCGTAAGATCTTCAGGGGTGTAGAGTCAAGTATGAGGAACCCCTGCTGGTTTGTAGGCCTCTCTACGAGGTAAACACACAAATGATTTGTTTATTTATTCTCAGTGTTAATTGTAGTCTATTTCCTTTCACTAGTCTATATTGTATCCTGTAAGCTATTGTTTCAGCAAATGAGGCATTGTGTGTGTACGAGTCTGTGGGATGCATCAGCTATAGCTGTCACAGCAGGACAATCATCCGCAGTTCGCTCAGCTTGATTGTAATTCCAGGGTGTTTGCAGGAATCTTTCTGGAGTGTGTGCATGTGTTTTGTGGAATGGGATTTCTTCAAATCCAGTGTGGGCATTTCATCTAGCACCGAAAGGCCAAGGGTGACCTCACAGCCACCCTCACACGACAAGCGCTCTTTCACTTTTTCTGGGTCATATGGATTAAGTCCAGGGTGCTTGGCATTCCTGAGTGTAAGCCTAGCTGGCCCCTAAAGGGCCGTCACCCTGCGCGCATTTGTATGCTAATGAGATCTGTGTCACCAAAGCTAATATTCTAATGTGATGGATAATACTCAAACAAATGATATTCAATATAGTTCAAATGTGGCTTTAGAGAAGGAATTATCTTAAGAATAAACTAGGATGAGAAGGGTGGGGCTAGGAGGGATTGATGTTAATAAACTTTGCATATTAATTAAAAATAATATTATATAAAAATGAAAATGCATCTGTGCTGTTTCAGCAGATGACTCAAGTGACTATATAGAGCAGTGTTATTGTTAACTAAAATTAAAAATAGTTTTCTTTAATTTAAATAAAATAATAGATGAAAAACTTTCTAACTGGAGTTTCTAACTGAAATGAAAAGTTTACATTGAAGTGCTAGCATTATTAAATCTGAATAAAACTGAAATAAATAAACATTAAAGCAAAGCAAAAATGTTTGATAAACTAATAAAAATGACGAGCATGAAATAAAATTACTACATCCAAAAGTAAATTTCGAATGAATGTAATTATCTTGTTCAACTTTCAGAATTTGAGGAACACCAGTATATAGTGTTCTCAAAAGTACCGACTTAGGTACCAAGTCAGTACTGAAATTTAAAAAATGTGACGCTTTGAGCGCTGTTAAACAGATTCGTAAACCCCTCTGATTGGCCTTTGTGTTGATGCTCTGTGATTGGCTACAATGATCAACGCTTTAAAAGCATGTTGTAAATAGACATCAGTGACGCTCTTCACCGAGTGCTTCACAGATACACACGGCAGCATTTGAAAGCAGGCGTCTATCAGCGGACCAGTCCGCTGATTGACGCCTGCTTATAAACGCTCCCGTTCCCGCTTTCAAAATGCTTTCATATTTAAACACTTCCGTTTGCTTTCAAATGCTTCCGTGCGTTAATCATTGTAGACAATTACAGACATATATATGTTGAGCGCGTGAACACAAAGGCCAATCAGAGGTGTTTACGAATCCGCGCAACAGCGCTCAAAGCGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU248075 True 4414 lncRNA 0.40 3 2312097 2316726

Neighbor

gene id symbol gene type direction distance location
CI01000051_02297468_02301682 PLPP3 coding downstream 9703 2296901 ~ 2311967 (-)
CI01000051_02148607_02152701 NA coding downstream 158672 2148469 ~ 2153425 (-)
CI01000051_01989511_02060303 USP24 coding downstream 251794 1989471 ~ 2060303 (-)
CI01000051_01926867_01942055 DHCR24 coding downstream 370042 1926686 ~ 1942055 (-)
CI01000051_01915943_01920786 NA coding downstream 391311 1915374 ~ 1920786 (-)
CI01000051_02359343_02360115 NA coding upstream 42365 2359091 ~ 2360115 (-)
CI01000051_02362692_02367269 NA coding upstream 45041 2361767 ~ 2367269 (-)
CI01000051_02391113_02451758 NA coding upstream 73156 2389882 ~ 2451758 (-)
CI01000051_02561929_02569617 NA coding upstream 244351 2561077 ~ 2570235 (-)
CI01000051_02918395_02918916 NA coding upstream 601590 2918316 ~ 2918916 (-)
G218770 NA non-coding downstream 104925 2206942 ~ 2207172 (-)
G218650 NA non-coding downstream 242848 2069025 ~ 2069249 (-)
G218645 NA non-coding downstream 335041 1976821 ~ 1977056 (-)
G218466 NA non-coding downstream 335605 1976127 ~ 1976492 (-)
G218716 NA non-coding upstream 33755 2350481 ~ 2354144 (-)
G218748 NA non-coding upstream 75685 2392411 ~ 2395777 (-)
G218765 NA non-coding upstream 174064 2490790 ~ 2526178 (-)
G218823 NA non-coding upstream 206133 2522859 ~ 2523575 (-)
G218829 NA non-coding upstream 262251 2578977 ~ 2579265 (-)
CI01000051_01785489_01787612 IGFBP1A other downstream 524337 1784416 ~ 1787760 (-)
CI01000051_00560810_00563417 NA other downstream 1744942 560768 ~ 563417 (-)
CI01000051_00394082_00407612 MTMR9 other downstream 1906302 392720 ~ 407612 (-)
CI01000051_00278614_00302552 NA other downstream 2029468 278192 ~ 304373 (-)
CI01000051_00224709_00227613 NA other downstream 2069071 224507 ~ 227613 (-)
G218728 NA other upstream 210617 2527343 ~ 2546459 (-)
G218861 NA other upstream 523544 2840270 ~ 2840632 (-)
CI01000051_02955633_02960400 SCRN2 other upstream 642862 2955380 ~ 2961148 (-)
G220041 NA other upstream 1839004 4155730 ~ 4158103 (-)
G221575 NA other upstream 3197226 5513952 ~ 5518824 (-)

Expression


Co-expression Network