Gene
RNA
| Item | Value |
|---|---|
| gene id | G218716 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 2350481 ~ 2354144 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU248057 | True | 1154 | lncRNA | 0.37 | 5 | 2350481 | 2354144 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000051_02297468_02301682 | PLPP3 | coding | downstream | 48087 | 2296901 ~ 2311967 (-) |
| CI01000051_02148607_02152701 | NA | coding | downstream | 197056 | 2148469 ~ 2153425 (-) |
| CI01000051_01989511_02060303 | USP24 | coding | downstream | 290178 | 1989471 ~ 2060303 (-) |
| CI01000051_01926867_01942055 | DHCR24 | coding | downstream | 408426 | 1926686 ~ 1942055 (-) |
| CI01000051_01915943_01920786 | NA | coding | downstream | 429695 | 1915374 ~ 1920786 (-) |
| CI01000051_02359343_02360115 | NA | coding | upstream | 4947 | 2359091 ~ 2360115 (-) |
| CI01000051_02362692_02367269 | NA | coding | upstream | 7623 | 2361767 ~ 2367269 (-) |
| CI01000051_02391113_02451758 | NA | coding | upstream | 35738 | 2389882 ~ 2451758 (-) |
| CI01000051_02561929_02569617 | NA | coding | upstream | 206933 | 2561077 ~ 2570235 (-) |
| CI01000051_02918395_02918916 | NA | coding | upstream | 564172 | 2918316 ~ 2918916 (-) |
| G218734 | NA | non-coding | downstream | 33755 | 2312097 ~ 2316726 (-) |
| G218770 | NA | non-coding | downstream | 143309 | 2206942 ~ 2207172 (-) |
| G218650 | NA | non-coding | downstream | 281232 | 2069025 ~ 2069249 (-) |
| G218645 | NA | non-coding | downstream | 373425 | 1976821 ~ 1977056 (-) |
| G218748 | NA | non-coding | upstream | 38267 | 2392411 ~ 2395777 (-) |
| G218765 | NA | non-coding | upstream | 136646 | 2490790 ~ 2526178 (-) |
| G218823 | NA | non-coding | upstream | 168715 | 2522859 ~ 2523575 (-) |
| G218829 | NA | non-coding | upstream | 224833 | 2578977 ~ 2579265 (-) |
| G218831 | NA | non-coding | upstream | 229067 | 2583211 ~ 2583426 (-) |
| CI01000051_01785489_01787612 | IGFBP1A | other | downstream | 562721 | 1784416 ~ 1787760 (-) |
| CI01000051_00560810_00563417 | NA | other | downstream | 1783326 | 560768 ~ 563417 (-) |
| CI01000051_00394082_00407612 | MTMR9 | other | downstream | 1944686 | 392720 ~ 407612 (-) |
| CI01000051_00278614_00302552 | NA | other | downstream | 2067852 | 278192 ~ 304373 (-) |
| CI01000051_00224709_00227613 | NA | other | downstream | 2107455 | 224507 ~ 227613 (-) |
| G218728 | NA | other | upstream | 173199 | 2527343 ~ 2546459 (-) |
| G218861 | NA | other | upstream | 486126 | 2840270 ~ 2840632 (-) |
| CI01000051_02955633_02960400 | SCRN2 | other | upstream | 605444 | 2955380 ~ 2961148 (-) |
| G220041 | NA | other | upstream | 1801586 | 4155730 ~ 4158103 (-) |
| G221575 | NA | other | upstream | 3159808 | 5513952 ~ 5518824 (-) |
