XLOC_000971


Basic Information

Item Value
gene id XLOC_000971
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6398199 ~ 6400326 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003323
attttatgtttacatattttacGTTAAATTTCATGTtaagttactgtaatttaactgccgttaatttacgtttttataaataacagatttttttacagtgcaggtaaCACAGGTGATCAAGCCTGGTGATGCTCATTGAAAGTGTTTATTTTAGGGGCTCCTGTGATGCTCCTAGATGGATAAAACATACGAGAAACAGGTTATGAGTGAATATCACAAAACATGGCAAGAATATGCTCGGATCACATTTCATCTCAAAAACTAGAAGTGAAAACAATTGCGTTTACTACatctttttaaggtaagtggttgcaaaaagttcatatggactgaatttaaacaaatttaaatgtagtaacgttcaattttttgttaaaattcagCCTAAATCAGTTGTTTGgaaccacttacctttaaaaatgtagtaaatttaatgtatatttttcgGTCTAAAACATGAACTTGggactgtttttattaatattattatcaacatATAGCAGGAACAAGCATCCATATCTAACTAAAACCTGTTTAACTGTTACTAATTGCAATATAAATGTCACAATTGTAGTTTTAATTGACTAATATATCCAGTTTTAGGGTGTGATATGTCCTGGCCATTTTTTGACCATCATGTTTTGTGAGGATCTGCAGTGCACCTGAATACAAAACTTTTGTGCTTGTGCTCAAATTCTCTTAGAGCTCGTCAAGTTATTGCAATCCACGAATCATGACATACGACGCTCTCTAACAGTTTCCCTCATGGACTTGACCATTTGTTCAATTTAAGTGCACCTTTTTCCTAAAAATCCTTCTTTAACATCCTCCAGCAGGACCAATTAGGGACGTTACCTTGGTCAAAACCAGCTAATGTGTTTGTCTTAATGGACTCCAGAAGCCCCGCAGAGAAGCTCGTCGTCTACTATTTTTATGTGCACTGTCTTTTAGCATCCCTCAAGTGTGTATAAAGCGTGTGCGTTCGCCGCTTTTAAAATCGACAACTTACTGACCTTTCTGCTGTGGGATAATGCAATTATTTGTAATTACGATGCACACTTGCAGgtacatttttacatttggtGTACAATTAACAAATCCGACACGAGCAGAGACACTACTAAACATGCAGGGAAACACTATATTAGGAGTTTGAATGCATTTCATATCTTGTGAAACTCTGATTAGTCTGTTTTAGGTCCGTGCGTTGTTTTTGGATTGATGCATTAGTACATTTACGTTAGCAGCTGGCGTCCGTTCGCTCCCATTCGAAGCAtcgttttgttttttgtactCTTCCATTGCTCAAAACGCTGTGCTAAAAGCTTTAAAATGGATTGTACGAAGCTGATAAACAGAGTGATTTCTAATGTCTGTTGCACTCGTAGCGTAGTTTTCCGGTTAAAGGCTTTTTTTCCACACTTCCTGCTGTAAGATAAATCCGATTCCTCTGCTTTTCGCGGGCATTTCATGCTTTCCACTTTGCTCCTATATTTATGCtgttttttgatttgtttatttttcgtTTTATTTGCTGTAAAAAGTGTTTgcatatattatttgtattatatgaTGTTAGTATGACAATGTTCTTTATTAAGGAAAAAGGAAAAGAGTTTATTTTTGTTACCGGTTTGTTtcataattcttttttaaattggTATTGTAATATATCTATGCAAGAACTGTTAAGTGAAGCATTTTTATTTAAGAATGTCATTATGTGTAATAAATGGTAGAATCTTACTGA

Function

GO:

id name namespace
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0150034 distal axon cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0050840 extracellular matrix binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003323 True 1750 lncRNA 0.34 2 6398199 6400326

Neighbor

gene id symbol gene type direction distance location
XLOC_000970 mdh1b coding downstream 172914 6218632 ~ 6225285 (-)
XLOC_000969 NA coding downstream 224498 6159631 ~ 6173701 (-)
XLOC_000968 NA coding downstream 312447 6060026 ~ 6085752 (-)
XLOC_000967 pard3ba coding downstream 369323 5798548 ~ 6028876 (-)
XLOC_000966 nrp2a coding downstream 652169 5606460 ~ 5746030 (-)
XLOC_000972 klf7a coding upstream 3225 6403551 ~ 6494384 (-)
XLOC_000973 CU571320.1 coding upstream 53078 6453404 ~ 6453519 (-)
XLOC_000974 CABZ01075316.1 coding upstream 741713 7142039 ~ 7142143 (-)
XLOC_000975 NA coding upstream 1144723 7545049 ~ 7554339 (-)
XLOC_000976 mxa coding upstream 1161990 7562316 ~ 7570181 (-)
XLOC_000962 NA non-coding downstream 1045757 5350872 ~ 5352442 (-)
XLOC_000961 NA non-coding downstream 1201478 5195078 ~ 5196721 (-)
XLOC_000960 NA non-coding downstream 1244371 5148593 ~ 5153828 (-)
XLOC_000980 NA non-coding upstream 1299697 7700023 ~ 7701856 (-)
XLOC_000981 BX908756.3 non-coding upstream 1371231 7771557 ~ 7844362 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G234194 NA non-coding NC_053135.1 CM020932.1 11798563 ~ 11822502 (-)
tiger barb (Puntius tetrazona) G1016 NA non-coding NC_056699.1 CM032068.1 5038720 ~ 5101322 (+)