XLOC_009718


Basic Information

Item Value
gene id XLOC_009718
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10378331 ~ 10379821 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021894
ggcccctcaaatgttgttttggtcattttaaaatgccttacCATTTAAGGAtgagtgttattatattattaaatacctCCAGAATATAGTGAAGCATCTGCGCTCCGCGTCTCACTCCTTCAAACGCCACCTTGTGGTCATTGCAATCCAGCATCGTCTTCTGgatgcaagtaatttattaaataaggaaaagatacACACAGCTTCTCAATCCTACCGCAGCAGATGAGTTTCTACTGTTGATATCTGGTGCTAGTTATtgaggaagtgacgattttattctctttgactcgttggatggaaacgctgctttattcgcacattttGCGATATTCTGGTTTTgttcataaatttaattcacatttttgtatGGAAAAACATAGCTATTGGTGTGTTCACAGATGCAGTTCAGACAGAGAATGGCAGACAAACATCAACAAgctactttatttaaaatatattggtTTGTAATTGCTAACTGTACTCTAAAGCTTCATCTCCGGTTAATTTGACATGTTTTATAGTAATGTTGTCTAGTGTGCATTCATGCGTTCAGGaggcatgcactgtaaaaatgcagggttccacacaattcattcatattgtcccgacacaaatcgattaagttaacttaacacttttaacaaatttatgtggattgaacataaaaaaattaagttgtcccaatgaaatttcaagaattgtgttgtttcagctcacttaaattaagtagtttgaacatgtaaacaaaaatatagaattttgagtgtggctttggatggccattTGCAGAGTGGGACTTATAGTGCTATCAGGCTGACGTTAGCATTTTACAAGAtctcctattgcacctttaagtGTTGTTTTGGAGCCCACTGACTTAAATACTATGGATAAAATGATTGAAATATTCTTCCAAATCTGATTTATTTGTTCTCCACAAAAGAAAGTCAGGCCTGGCACCATGAGAGGCCAAAGGAGGCATTGATCCTACTTATGTAATTTGTGTCCCTCAGCAGGACAAGTGTGAAATACTTGCAATTTCAGATGATAAATGTTTCTAACGGAGGAGAACAAAAATCGTAACAAGCGAGGACATTGTGTGCATCTCCAAGAATGACATATTTGTGTGCTCTGGTGTCTGTAATCATCCAGGCTTGAAACTACATGAGGGTGAGTACATATTTCAGATTAACTATACCTTTAAGTAAATACCCAGAATTGAATTGGTGTGGAATGGTCTCTCGAGTGAGGAAAAATGAACGTTGAGAATGTAAAATGTACGAGACGTCCAAATATCCTGTGGTGTTGTGCATTCTCCAAGTATACTCCAAGTGCGGTTGTGTCCCACAGGTGCATGAGAGGATTCTCTACAGTCTTATCTGTCCCCGTTCTTCCTTTTTGCACAAATACAACACATAAACATTTTGTAAAGAAGTGATACTTCCTTTATTTCATGCCTAGAAATgataataaatgattttaaaatga

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0043010 camera-type eye development biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0032940 secretion by cell biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0140029 exocytic process biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048278 vesicle docking biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007600 sensory perception biological_process
GO:0055067 monovalent inorganic cation homeostasis biological_process
GO:0007601 visual perception biological_process
GO:0042551 neuron maturation biological_process
GO:0099500 vesicle fusion to plasma membrane biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0048880 sensory system development biological_process
GO:0007626 locomotory behavior biological_process
GO:0023061 signal release biological_process
GO:0061024 membrane organization biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030004 cellular monovalent inorganic cation homeostasis biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0051640 organelle localization biological_process
GO:0051648 vesicle localization biological_process
GO:0051649 establishment of localization in cell biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0016050 vesicle organization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0048786 presynaptic active zone cellular_component
GO:0033176 proton-transporting V-type ATPase complex cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005484 SNAP receptor activity molecular_function
GO:0022804 active transmembrane transporter activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko04024 cAMP signaling pathway
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021894 True 1491 lncRNA 0.37 1 10378331 10379821

Neighbor

gene id symbol gene type direction distance location
XLOC_009717 si:dkeyp-77h1.4 coding upstream 9033 10346277 ~ 10369298 (+)
XLOC_009716 mdc1 coding upstream 32562 10329701 ~ 10345769 (+)
XLOC_009714 tubb5 coding upstream 50711 10318893 ~ 10327620 (+)
XLOC_009715 FP016064.1 coding upstream 53666 10324549 ~ 10324665 (+)
XLOC_009713 mrs2 coding upstream 85394 10264286 ~ 10292937 (+)
XLOC_009719 CU929328.1 coding downstream 7898 10387719 ~ 10389787 (+)
XLOC_009720 ino80e coding downstream 33730 10413551 ~ 10422490 (+)
XLOC_009721 ino80e coding downstream 43015 10422836 ~ 10428899 (+)
XLOC_009722 vars1 coding downstream 49949 10429770 ~ 10475814 (+)
XLOC_009723 si:ch73-22o12.1 coding downstream 177683 10557504 ~ 10638020 (+)
XLOC_009712 NA non-coding upstream 361618 10012335 ~ 10016713 (+)
XLOC_009704 NA non-coding upstream 850025 9526080 ~ 9528306 (+)
XLOC_009703 NA non-coding upstream 862524 9515326 ~ 9515807 (+)
XLOC_009702 NA non-coding upstream 872812 9504373 ~ 9505519 (+)
XLOC_009724 NA non-coding downstream 237533 10617354 ~ 10617686 (+)
XLOC_009733 NA non-coding downstream 981939 11361760 ~ 11376845 (+)
XLOC_009736 NA non-coding downstream 1193368 11573189 ~ 11578407 (+)
XLOC_009737 NA non-coding downstream 1200831 11580652 ~ 11583878 (+)

Expression


Co-expression Network