G219289


Basic Information

Item Value
gene id G219289
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3951502 ~ 3958033 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU248732
TTTTATTATTGCAACTGGAAGACAATACATTACATAAACATTATTTTAAGTTTCAGGAGAAATATGTGGAAAAGTAACAACATGATGTGACATTTATTGTCATATAGACAATGTGATTATTTACATGTATTGATGAAATAGTTTGATATTGTTCTTTGGCAATATGATTGCACACCAAGGAAATAGACAGCTTTATACTCGTACAGCATTGGCATCTGTGTGTATTGAAAATAGACCTGGTCAAATACATATTCATCATGACTCCATTGTGCTCTAAAATCATATCAGACCACTAGTGACTTATGTAAGTACAAGGACAAAAACATATTTGGCAAAAACAAACAACATCAACAACATTGACAAAACCCTTATATTATTTCACATATAATTTCAGAGGCAGTGAGAGTTTTCCAATAAATAATTCATGCATATTTGTTTCCCCTTTTTGTCTTACATGGATTTGTATGAATCTTAGCTATTAAATCAGTTAAAAACAAATCGTGTTTTTTGGTACACACGCGCACACGCACACACACACACACACACACAAAAAAAAAAAACATGAACATGAGATTCTTTCACCCGGGAAATCAAATTTAACAAGGGACAACAGTGATTTTATTGATATTGCAACAACTGACTAGAATTCACCTGATATCCTGGAACAGAAGTATTTAGATCTGTGTTAACGGGATTTCCGTTCATTGCTAATCACTGGCTTCCTCTTTCAGCTCCTTCTGAACTTTACACATACGCTGAGCGTTCTTATTCAAACCGGTGCGCACGCCAGCCAGGTGAAGCAACGACCCCGCCGCCTCCTTCATCTCCTCATCTTCCTCCTCTTTTACCAGGAGATTTTCCGCCCTCCTCTTCTTCAGGGGAAGTGTGTCACCAGGGGTCCGTAGGTGACCTTTGGTCCACAGCAGTCTTCTGCGCTGGAGCAGCTGGGGAAGAGGTGGCGAAGCGTCCAGCGGAAAGTCTTTTTGCTCCTCCTTGACCTCAGTGACCGTCGCCTCCTGACCGTGGCTGTAGACAGAGAGGGAACCCTGAGTGGAGCAGGAGGAGAGGGAGGAAGAAATGTCCCCCTTTGTACTTGGAGACTGGGAGCTGCTGTATGTGTGGTCCTCCTGTTGATCATCGCTGGGTGGAGGAGAGTCACTGCACAGACTGTTTTTACCCCGTGTCAGATAGTCGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248732 True 1196 lncRNA 0.42 2 3951502 3958033

Neighbor

gene id symbol gene type direction distance location
CI01000051_03800655_03819155 ZYG11B, ZYG11 coding upstream 132305 3800655 ~ 3819197 (+)
CI01000051_03687377_03698806 ANGPTL1A, ANGPTL1 coding upstream 252539 3687324 ~ 3698963 (+)
CI01000051_03679568_03682342 NA coding upstream 268974 3679437 ~ 3682528 (+)
CI01000051_03457204_03459579 NA coding upstream 491578 3456959 ~ 3459924 (+)
CI01000051_03443548_03451188 NA coding upstream 499688 3443548 ~ 3451814 (+)
CI01000051_04038453_04045552 TMEM30A, TMEM30AA, TMEM30AB coding downstream 80374 4038407 ~ 4046528 (+)
CI01000051_04071144_04075444 KCNK13B coding downstream 113111 4070951 ~ 4077125 (+)
CI01000051_04081532_04085798 PSMC1B, PSMC1, PSMC1A, PSMC1.L coding downstream 123499 4081532 ~ 4085922 (+)
CI01000051_04094412_04101387 CALM2, CALM3, CALM1 coding downstream 136321 4094354 ~ 4101516 (+)
CI01000051_04155754_04157992 NFKBIAA coding downstream 197651 4155684 ~ 4158329 (+)
G219366 NA non-coding upstream 837 3950436 ~ 3950665 (+)
G219365 NA non-coding upstream 1443 3949845 ~ 3950059 (+)
G219294 NA non-coding upstream 27797 3923353 ~ 3923705 (+)
G219357 NA non-coding upstream 32665 3918036 ~ 3918837 (+)
G219354 NA non-coding upstream 36214 3914786 ~ 3915288 (+)
G219405 NA non-coding downstream 46781 4004814 ~ 4005027 (+)
G219409 NA non-coding downstream 52146 4010179 ~ 4010415 (+)
G219414 NA non-coding downstream 55982 4014015 ~ 4014231 (+)
G219428 NA non-coding downstream 68793 4026826 ~ 4027033 (+)
G219429 NA non-coding downstream 69789 4027822 ~ 4028047 (+)
G218981 NA other upstream 704629 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 1885419 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 3226798 637590 ~ 720669 (+)
G217075 NA other upstream 3567374 324465 ~ 384128 (+)
CI01000051_04374052_04393328 NA other downstream 416377 4372658 ~ 4393677 (+)
G219803 NA other downstream 956941 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 2867766 6825895 ~ 6830637 (+)
G221319 NA other downstream 3384008 7342041 ~ 7342546 (+)
G221386 NA other downstream 3451490 7401175 ~ 7413007 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G177656 NA non-coding CI01000039 null 104728 ~ 109202 (+)
tiger barb (Puntius tetrazona) G136615 LOC107658179,LOC107721814,LOC107597848,LOC107712852,LOC107664819,LOC107581482 non-coding NC_056718.1 CM032087.1 7544560 ~ 7594859 (+)
mexican tetra (Astyanax mexicanus) G149056 NA non-coding NC_035913.1 CM008316.1 2863463 ~ 2907897 (-)
mexican tetra (Astyanax mexicanus) G270298 NA non-coding NW_019172086.1 APWO02001684.1 181445 ~ 187648 (-)