XLOC_009720 (ino80e)


Basic Information

Item Value
gene id XLOC_009720
gene name ino80e
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10413551 ~ 10422490 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019462
GTCGAAATCAGCAGCGTTGTACATGACATGCGTGAGATGTGCGCTGTATTCTTAAATATGACTTAAATTTGTTTGgaatatattattgcattatcaTTGGCTATTTAGCAGTGTCTAATACGTTTAACACGACCAGTAAATATGTCGTTTGTTGATTAATTTACGTTATGTTTATGTAGCGTTAGCTTGGCTAAAAATACTAGCAATTTGTTGTACGTTAGTGTTTTAAATTGTGGAGTAAAATAGACATTGCCATTCAAAGGACAACAATACAGTTTTGGTCACTCTGAATTCACATGAAATAGCGAAGCCACCTAATAAAACGACTGCATATTTACATTTGGGCGTCTGAAATGAACGGGCAAGCAGAAGTAGAGGTGGATTACAAGAGAAAATACAAAAATCTTAAACGCAAGTTAAAGTTTCTGGTGTATGAGCAAGAATGTTTTCAAGAGGAGCTAAGAAGAGCTCAGAGGAAACTGTTAAAAGTTTCTAGAGACAAAAGTTTTCTGCTGGACAGGCTGTTGCAGTATGAAAGGGTGGATGAAGAATCGTCTGACTCTGATGCAACAGTTTCCTCAGACAGTGATGGAGAGGGagccagagagagagacagggaaGCAGGGAAGAAGAGGAGGAGTCCTGGAGTTCCTCCTGTTCCGTCGTCCTCGTCTCCTCATCTGTCTCTCCTGTCCCGCTCTGGTGCTCTCCAGTCCTCCGCTTCGGCACAATACCTCAATGCTTTACCCTTCCCTCCTGAGTATTTGGCTCCCTCTGCTGAGCGAgtgaagaaagagagaaaaacaaaactgGCCAAACACAGGAAAGATGGTTCAGGGAAGGTGGTTGGTCCACTCTCTTCCAGTTACCCGGCGGGCAGTGGCCCAGCGGGGGGTGCGAGTGGGCCGTTCAGCTGGGTCCCGCAGCAGATGCTAAGCGAGGATGCAGGAGAAGACGAGGGAGACAGTGAAGGAGAGAGTGACcgaggagaggaggagagaggagAGGGAGACGAGGCAGAGCTGGTCATTGACATACCTAATGAGTGAAGGTGCCGAGAAAAACTACAAGcaaaacatgatcatttttgttgtttattgtttttttatattaaatgtttaaaatata
>TCONS_00019463
GAAATCAGCAGCGTTGTACATGACATGCGTGAGATGTGCGCTGTATTCTTAAATATGACTTAAATTTGTTTGgaatatattattgcattatcaTTGGCTATTTAGCAGTGTCTAATACGTTTAACACGACCAGTAAATATGTCGTTTGTTGATTAATTTACGTTATGTTTATGTAGCGTTAGCTTGGCTAAAAATACTAGCAATTTGTTGTACGTTAGTGTTTTAAATTGTGGAGTAAAATAGACATTGCCATTCAAAGGACAACAATACAGTTTTGGTCACTCTGAATTCACATGAAATAGCGAAGCCACCTAATAAAACGACTGCATATTTACATTTGGGCGTCTGAAATGAACGGGCAAGCAGAAGTAGAGGTGGATTACAAGAGAAAATACAAAAATCTTAAACGCAAGTTAAAGTTTCTGGTGTATGAGCAAGAATGTTTTCAAGAGGAGCTAAGAAGAGCTCAGAGGAAACTGTTAAAAGTTTCTAGAGACAAAAGTTTTCTGCTGGACAGGCTGTTGCAGTATGAAAGGGTGGATGAAGAATCGTCTGACTCTGATGCAACAGTTTCCTCAGACAGTGATGGAGAGGGagccagagagagagacagggaaGCAGGGAAGAAGAGGAGGAGTCCTGGAGTTCCTCCTGTTCCGTCGTCCTCGTCTCCTCATCTGTCTCTCCTGTCCCGCTCTGGTGCTCTCCAGTCCTCCGCTTCGGCACAATACCTCAATGCTGTGGTTGGTCCACTCTCTTCCAGTTACCCGGCGGGCAGTGGCCCAGCGGGGGGTGCGAGTGGGCCGTTCAGCTGGGTCCCGCAGCAGATGCTAAGCGAGGATGCAGGAGAAGACGAGGGAGACAGTGAAGGAGAGAGTGACcgaggagaggaggagagaggagAGGGAGACGAGGCAGAGCTGGTCATTGACATACCTAATGAGTGAAGGTGCCGAGAAAAACTACAAGcaaaacatgatcatttttgttgtttattgtttttttatattaaatgtttaaaata

Function

symbol description
ino80e Acts upstream of or within brain development. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Is expressed in brain. Orthologous to human INO80E (INO80 complex subunit E).

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0007420 brain development biological_process
GO:0031011 Ino80 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1818 Acts upstream of or within brain development. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Is expressed in brain. Orthologous to human INO80E (INO80 complex subunit E).

Ensembl:

ensembl_id ENSDARG00000022939

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019462 False 1128 mRNA 0.44 8 10413551 10422490
TCONS_00019463 True 1024 mRNA 0.44 7 10413554 10422488

Neighbor

gene id symbol gene type direction distance location
XLOC_009719 CU929328.1 coding upstream 23764 10387719 ~ 10389787 (+)
XLOC_009718 NA coding upstream 33730 10378331 ~ 10379821 (+)
XLOC_009717 si:dkeyp-77h1.4 coding upstream 44253 10346277 ~ 10369298 (+)
XLOC_009716 mdc1 coding upstream 67782 10329701 ~ 10345769 (+)
XLOC_009714 tubb5 coding upstream 85931 10318893 ~ 10327620 (+)
XLOC_009721 ino80e coding downstream 346 10422836 ~ 10428899 (+)
XLOC_009722 vars1 coding downstream 7280 10429770 ~ 10475814 (+)
XLOC_009723 si:ch73-22o12.1 coding downstream 135014 10557504 ~ 10638020 (+)
XLOC_009724 NA coding downstream 194864 10617354 ~ 10617686 (+)
XLOC_009725 zgc:165409 coding downstream 301916 10724406 ~ 10734300 (+)
XLOC_009715 FP016064.1 non-coding upstream 88886 10324549 ~ 10324665 (+)
XLOC_009712 NA non-coding upstream 396838 10012335 ~ 10016713 (+)
XLOC_009704 NA non-coding upstream 885245 9526080 ~ 9528306 (+)
XLOC_009733 NA non-coding downstream 939270 11361760 ~ 11376845 (+)
XLOC_009736 NA non-coding downstream 1150699 11573189 ~ 11578407 (+)
XLOC_009737 NA non-coding downstream 1158162 11580652 ~ 11583878 (+)
XLOC_009751 NA non-coding downstream 1695141 12117631 ~ 12139336 (+)

Expression


Co-expression Network