G219438


Basic Information

Item Value
gene id G219438
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 4051095 ~ 4051643 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU248895
ATCTTCCAGGAGATTTTGGAGCACTTTATGCTTCCATCTGCTGACAAGCTTTATGGAGATGCTGATTTCCTTTTCCAGCAGGACTTTAGCACCTGCCCACAGTGCAAAAACCACTTCCAAGTGGTTTGCTGACCATGATATTACTGTGTTTTATTGGCCAGCCAACATGCCTGACCTGAATCTATGGGATATTTTCAAGAGAAAGATGAGAAACAGTCGATCCAACAATATACAGATGATCTGAAGGCTCAATAGTGCCTCAGCAGTGCCACAGGCTGATCACTTCCATGCCACACTTCACTGATGCTGTAATTTGTGCTAGGAGCAAGTCATTTGCTGTAATATGTGCTGCCGACCAAGTATTGAGTGCACAAATGAACATA
>TU248889
CTGCTGACAAGCTTTATGGAGATGCTGATTTCCTTTTCCAGCAGGACTTTAGCACCTGCCCACAGTGCAAAAACCACTTCCAAGTGGTTTGCTGACCATGATATTACTGTGTTTTATTGGCCAGCCAACATGCCTGACCTGAATCTATGGGATATTTTCAAGAGAAAGATGAGAAACAGTCGATCCAACAATATACAGATGATCTGAAGGCTCAATAGTGCCTCAGCAGTGCCACAGGCTGATCACTTCCATGCCACACTTCACTGATGCTGTAATTTGTGCTAGGAGCAAGTCATTTGCTGTAATATGTGCTGCCGACCAAGTATTGAGTGCACAAATGAACATA
>TU248893
CTGCTGACAAGCTTTATGGAGATGCTGATTTCCTTTTCCAGCAGGACTTTAGCACCTGCCCACAGTGCAAAAACCACTTCCAAGTGGTTTGCTGACCATGATATTACTGTGTTTTATTGGCCAGCCAACATGCCTGACCTGAATCTATGGGATATTTTCAAGAGAAAGATGAGAAACAGTCGATCCAACAATATACAGATGATCTGAAGGCTCAATAGTGCCTCAGCAGTGCCACAGGCTGATCACTTCCATGCCACACTTCACTGATGCTGTAATTTGTGCTAGGAGCAAGTCATTTGCTGTAATATGTGCTGCCGACCAAGTATTGAGTGCACAAATGAACATACTTTAAAGAACTTGAACTTTTCTGTTTAGCAAATCCATTTTTTGATTGATCTTAGGAAATATTCTAATATTTTGAGATACTGGATTTTGGACTTTCATGAGCTGTACACTCTAATCATCAAAATTTAAAAAAAAAAAACTTTTGAAATGTTTTACTTTACATGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248895 False 383 lncRNA 0.44 1 4051095 4051477
TU248889 False 346 lncRNA 0.44 1 4051132 4051477
TU248893 True 512 lncRNA 0.38 1 4051132 4051643

Neighbor

gene id symbol gene type direction distance location
CI01000051_04038453_04045552 TMEM30A, TMEM30AA, TMEM30AB coding upstream 4567 4038407 ~ 4046528 (+)
CI01000051_03800655_03819155 ZYG11B, ZYG11 coding upstream 231898 3800655 ~ 3819197 (+)
CI01000051_03687377_03698806 ANGPTL1A, ANGPTL1 coding upstream 352132 3687324 ~ 3698963 (+)
CI01000051_03679568_03682342 NA coding upstream 368567 3679437 ~ 3682528 (+)
CI01000051_03457204_03459579 NA coding upstream 591171 3456959 ~ 3459924 (+)
CI01000051_04071144_04075444 KCNK13B coding downstream 19501 4070951 ~ 4077125 (+)
CI01000051_04081532_04085798 PSMC1B, PSMC1, PSMC1A, PSMC1.L coding downstream 29889 4081532 ~ 4085922 (+)
CI01000051_04094412_04101387 CALM2, CALM3, CALM1 coding downstream 42711 4094354 ~ 4101516 (+)
CI01000051_04155754_04157992 NFKBIAA coding downstream 104041 4155684 ~ 4158329 (+)
CI01000051_04374052_04393328 NA coding downstream 321015 4372658 ~ 4393677 (+)
G219434 NA non-coding upstream 18340 4032479 ~ 4032755 (+)
G219431 NA non-coding upstream 21150 4029739 ~ 4029945 (+)
G219429 NA non-coding upstream 23048 4027822 ~ 4028047 (+)
G219428 NA non-coding upstream 24062 4026826 ~ 4027033 (+)
G219414 NA non-coding upstream 36864 4014015 ~ 4014231 (+)
G219439 NA non-coding downstream 3469 4055112 ~ 4055966 (+)
G219440 NA non-coding downstream 4556 4056199 ~ 4056441 (+)
G219451 NA non-coding downstream 11611 4063254 ~ 4063453 (+)
G219452 NA non-coding downstream 12758 4064401 ~ 4064853 (+)
G218981 NA other upstream 804222 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 1985012 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 3326391 637590 ~ 720669 (+)
G217075 NA other upstream 3666967 324465 ~ 384128 (+)
G219803 NA other downstream 863331 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 2774156 6825895 ~ 6830637 (+)
G221319 NA other downstream 3290398 7342041 ~ 7342546 (+)
G221386 NA other downstream 3357880 7401175 ~ 7413007 (+)

Expression


Co-expression Network