Gene
RNA
| Item | Value |
|---|---|
| gene id | G220041 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 4155730 ~ 4158103 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU249582 | True | 2261 | TUCP | 0.42 | 2 | 4155730 | 4158103 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000051_04130677_04139186 | NA | coding | downstream | 16313 | 4130443 ~ 4139417 (-) |
| CI01000051_04113212_04113541 | NA | coding | downstream | 42031 | 4113030 ~ 4113699 (-) |
| CI01000051_03957545_03974003 | NA | coding | downstream | 181727 | 3957455 ~ 3974003 (-) |
| CI01000051_03941471_03944205 | NA | coding | downstream | 211186 | 3941471 ~ 3944544 (-) |
| CI01000051_03872287_03913487 | LRRC52, LRRC26 | coding | downstream | 242243 | 3871764 ~ 3913487 (-) |
| CI01000051_04160061_04160421 | NA | coding | upstream | 1870 | 4159973 ~ 4160421 (-) |
| CI01000051_04165819_04167331 | PSMA6 | coding | upstream | 7679 | 4165782 ~ 4168314 (-) |
| CI01000051_04199737_04203141 | NA | coding | upstream | 40956 | 4199059 ~ 4203141 (-) |
| CI01000051_04206048_04211968 | NA | coding | upstream | 47896 | 4205999 ~ 4211968 (-) |
| CI01000051_05048070_05049768 | NA | coding | upstream | 889885 | 5047988 ~ 5050911 (-) |
| G220205 | NA | non-coding | downstream | 50125 | 4105330 ~ 4105605 (-) |
| G220204 | NA | non-coding | downstream | 50463 | 4105049 ~ 4105267 (-) |
| G220200 | NA | non-coding | downstream | 69694 | 4083300 ~ 4086036 (-) |
| G220198 | NA | non-coding | downstream | 84309 | 4070978 ~ 4071421 (-) |
| G220196 | NA | non-coding | downstream | 87723 | 4067786 ~ 4068007 (-) |
| G220214 | NA | non-coding | upstream | 14727 | 4172830 ~ 4173075 (-) |
| G220060 | NA | non-coding | upstream | 38423 | 4196526 ~ 4198605 (-) |
| G220250 | NA | non-coding | upstream | 65196 | 4223299 ~ 4223536 (-) |
| G220255 | NA | non-coding | upstream | 67885 | 4225988 ~ 4226252 (-) |
| G220262 | NA | non-coding | upstream | 74316 | 4232419 ~ 4232665 (-) |
| CI01000051_02955633_02960400 | SCRN2 | other | downstream | 1194236 | 2955380 ~ 2961148 (-) |
| G218861 | NA | other | downstream | 1315098 | 2840270 ~ 2840632 (-) |
| G218728 | NA | other | downstream | 1609271 | 2527343 ~ 2546459 (-) |
| CI01000051_01785489_01787612 | IGFBP1A | other | downstream | 2367970 | 1784416 ~ 1787760 (-) |
| CI01000051_00560810_00563417 | NA | other | downstream | 3588575 | 560768 ~ 563417 (-) |
| G221575 | NA | other | upstream | 1355849 | 5513952 ~ 5518824 (-) |
| G221840 | NA | other | upstream | 1974670 | 6132773 ~ 6133579 (-) |
| G222729 | NA | other | upstream | 4184046 | 8342149 ~ 8342652 (-) |
| G222730 | NA | other | upstream | 4184867 | 8342970 ~ 8343438 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| tiger barb (Puntius tetrazona) | G136564 | LOC107658182,LOC107581491,LOC107742110 | non-coding | NC_056718.1 | CM032087.1 | 7156262 ~ 7370259 (+) |
