XLOC_009725 (zgc:165409)


Basic Information

Item Value
gene id XLOC_009725
gene name zgc:165409
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10724406 ~ 10734300 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019467
AGAAACaagatgaagaagaaaaagaagacgaAGAAGAAATTTGCTGATATGTTTTGACTCGTTAATTCAAAGTAAACTAGCGACGAAGAAAGTTGTTTGACGGAATATGGCCCGAATCGGACGACTGGATGAGTATGAGCCAGAACATGAATCGTGGTCTGCATATGTTGAGCGGGTAGAATTGTTCATGATCGCTAATGATGTGGACGATACAAAGCAAGTGGCGACTTTGCTTACTGCTATGGGAGCTTCCACTTACAGATTATTGCGGGATCTAGTTCAACCATTAAAGCCTAAGGATAAAACATTTAGCGAGATTGTCAGTATACTACAAGCACACTTTGAAAACAAGGAGTTAATAAAAGCCGAACGCTTGCGGTTTCAGCGCCGTGTTCAAAAACCGGATAAAACTATTTCCCAGTATGTCGATGAACTCGCAGAATATGCGGCCAAATGTGATTTTGGGGCAAGTTTTGAAGACGCTTTACGTGATCGATTTGTTAACGGACTACAAAATGAAGCATGCCAAAAAAGATTGCTCTCCGAGGACGCGCTGACTTTTGCACGCGCGGTTGAAATCGCTCTCAGCCTGGAAGAAACGGCTCAGGAACCGCAACAGCCGAGGAAAACCACGCTTTCAATGGCACCTGTGATTAAGCATCCTACGCATTTTCAATCCAAGCCTGATGCAGAAGAGTTCTTTCGAAACGGGGGCTTTGAATGTCCCTGCTGCCCTTTCATTGCAAAGGAAAATTATGCTTTTAAAGTTCACACGGATACCCATATAAGGAATGCAGTGAGGCACGAAGGTTACTTCATCTCAAAATGCAGTAAGCCGTGCAGGAGCGCAGCCCATTTTCACTGTCTCTACTGCAGCCAGACATTAGTACGCAGAGAACAATTCGCTCGGCATGTTGCCGGTTGTCCTAATACAGAGCCGTCTGTTGCAGCTTCTTCACCTCTGCCTCCCTCTCTCTTTGTAGCTGCAGGCCCCACATCCCCACCCTGTGCTGCTTTAGTTACTCAGTCTCCACCTGCACCTCCATCTCCCTTGGTAGCTCCAAAACCACCCATAGTTATTTTAGTTGCCAAGTCTCTAGTATCCACCCCCTGTTCCGCTGATCCAGTCACTTTTGAACCACCCCCAAAGTTGCAAAAGAAGGGAGAaaatgcgaaaaaaaaaaaaaatgagaaggTCATATGTCCTGATTGTGGACTGGCACTTAACAAGAGAAATGTAAAGACGCATTTTCAGAGACGGCATGCTCCAAAAATCGACATTATCACCGAGGACCAGCTGAATTAAGTCACAGCACGTGGCTAATATTAATGGGTGTCTGAAGTAGCCAAATCATTTTAGCACTCATCAGAAAAACGTGGGACTGTAAACAAAGagcaacatgcaaactcgacagcTGCAGAATGAATGTAGGTTTTAGCAGAAAGATCAAACATTCATTTCTACGAGTGCCAACACCTACAGGAACTTGCCCACCAGCAAAAAGGGACATTCTTCTTAAAGGCATAGAAGGTTTTACAGGCCATGGCTGACAGTTGTTGAAGGAACTGATGTTTAGCAGGACAAAGAGAAGCAAAAGCTGGGTCAAGCACATATGCTTCCAGGAGGATAACATCACACAACATTTTCCTGCTAATGTTGAAGGTTTTTAGGAAGTGGAAGAAACCCAATACTCACCTGAAGACTAGAATCTGACTTGAAtagttttatatacatatattcaaaaACTGATCCCTTAAAATCCTCGGAGCTTCACATCATCTGTAACCTTTTGCACTGAAAGTTTAGAGgcggggtgtcaaactcaattcctggagggccgaagccctgcacagtttaaccTTGCTCCAAcccacttacctgtaggtttcaaacaagcccgaaggactcaattagtttgatcaggtgtgtttaactagggttggaactaaactgtgcagagctgcggcccttttggaactgagtttgacacctctggtTTAGAGATATCGGTAACACTTtgtaataactacacactataaatcatttattaagcatcagCATCTATTGAATTCATTATTTGGTaaacattaactctacattaataagcgttagtaagcagtttataactgcagctacaaatgctctattcttgacttacaaacatatttaaaatgtgcttaataattatactttcatactttaatgatttatttttcattactaaattaggtatcgcattatttacaaaccagttgtatttaagagtagttgaggatttttaggatcattcagaatgagtttgtAAATGATTGATTAACTACTGAAATCAACgttaaaatgtctttttatatatattaatggttactatgtgtgttagtaaatgctttattaactcaacttcatgcagtttttttgtgacctaatctaaagtgaggactattcatgctttataaatccgttataaatgacaattaaaggctcagttaaattctaaacaggaagaatgacattattaattcctattcatttaaacatacgcaaatgaaactgtacttcaaatgaaaaataatcttTGCAACCGTATCTAAAATAAAGTGACTGTAGATTTTAAACACTGCAtcttattaaattgttaaattattatattgttgttgttttatccagttttatgtcgtgTTTAAACTtcacattaatttaaatttttagaaaagattgcaaagattattgttcacttgattctgagcctttatttgtcatttataagggatttataaagcatgaatagtccttactttagtttaggtcataaAACTGCATGAAattaagttaataaagcatttattaacatattaattaactattagtatatgcctgaataatacgatatataaacattcatttcaatagtttattaatcatttactaactcattctgaattatcctaaaaccctcaactactcatAAATACAACTGGTAcgtaaataatgcaatacctaatttagtaatgaaaaataaatcattaagtatgaaaatacaattattatataagtgcttataagtcaagaatagagcatttgtagctgcagttataaactgcttactaacgcttattaatgtagagttaatgcttaatggataatgaattcactagatgctgatgcttaataaatggtttatagtgtgtagttattataaagtgttaccaagataTCTTCACTAAGTGAACCTTTGATCATCACATCAACAGAAAACCTGATGATGGCACCAATGTTGTAGGTTTGCTGTGTTTTCTTGAAAGATTTTCCTTATTCTGCAGGCCTGCTTAAGTTTTGAGACACTGTCCGACCACACCTACACATTTTCTTGTGTATCGTTTGATTACCATGCAGTGCTCATTGTTCATACGGATGGTGTTTTTAGCATGTCTGGTAAGTCCAGTTTTCTTTTCTACTCGTATACTATTTTGATTTACACAGAAAGTCTAGCTTAGGAAAACGTTTTCTAGTAAAATGTTTCTCAACCCACTTAGAAGACATTTTGTATCATCATTAGATCAAGTGTGGAGATCCTGCTCGTTTTTTCCATGATATTTCCTTTTGTGAAATAATTGATTTTTTTGAAAGGGAACTTTCTAACCAAAGCGGTGTAATCAAAAATGTGCAAGAATTGTATACTTTGACATTTGATAAACAAGTTATGAATACAAAAATAGGTGAACACACTGTCTCCTGTCACAGCTTTCTCCTTCTATCTTTTCTTTTTCCACAGCTCCCTTACTtcgtaacccccccccccccgccccccAATGTAATGTAGccatgtttttgtaaataaatgtaatattgttttatatttta

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070615-19 No description available

Ensembl:

ensembl_id ENSDARG00000091385

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019467 True 3859 mRNA 0.37 3 10724406 10734300

Neighbor

gene id symbol gene type direction distance location
XLOC_009723 si:ch73-22o12.1 coding upstream 86386 10557504 ~ 10638020 (+)
XLOC_009724 NA coding upstream 106720 10617354 ~ 10617686 (+)
XLOC_009722 vars1 coding upstream 248592 10429770 ~ 10475814 (+)
XLOC_009721 ino80e coding upstream 295507 10422836 ~ 10428899 (+)
XLOC_009720 ino80e coding upstream 301916 10413551 ~ 10422490 (+)
XLOC_009726 atp1a3b coding downstream 42388 10776688 ~ 10820909 (+)
XLOC_009727 dedd1 coding downstream 106863 10841163 ~ 10863041 (+)
XLOC_009728 pou2f2a coding downstream 183952 10918252 ~ 10991240 (+)
XLOC_009729 erfl3 coding downstream 295462 11029762 ~ 11142797 (+)
XLOC_009730 cicb coding downstream 417399 11151699 ~ 11224444 (+)
XLOC_009719 CU929328.1 non-coding upstream 334619 10387719 ~ 10389787 (+)
XLOC_009718 NA non-coding upstream 344585 10378331 ~ 10379821 (+)
XLOC_009715 FP016064.1 non-coding upstream 399741 10324549 ~ 10324665 (+)
XLOC_009712 NA non-coding upstream 707693 10012335 ~ 10016713 (+)
XLOC_009733 NA non-coding downstream 627460 11361760 ~ 11376845 (+)
XLOC_009736 NA non-coding downstream 838889 11573189 ~ 11578407 (+)
XLOC_009737 NA non-coding downstream 846352 11580652 ~ 11583878 (+)
XLOC_009751 NA non-coding downstream 1383331 12117631 ~ 12139336 (+)
XLOC_009755 CR388102.1 non-coding downstream 1565869 12300169 ~ 12300286 (+)

Expression


Co-expression Network