XLOC_009726 (atp1a3b)


Basic Information

Item Value
gene id XLOC_009726
gene name atp1a3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10776688 ~ 10820909 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019468
ATCCCTCACATCCACCGGCGCTTCTTTCTAGGCGGAGTGGTGCGGCAGCCGGCTGTGCCGCGGAGGGACACCAGACCATAAAAGGCGGCAGTGCGGCTTCTTAGTTTTGCCGGCTTTATCGCAACTAACAAGAGCAGTGCACGAGACCGGCATCCCTGCGAAATGCACTGCCTCGCCGTCGAATTTGCTTTGAACATTTAGTTTTAACCTTAACAAATTTGGCAGGTTCCTTAAATTAATGTTGCAACGAGTAACTTCTGTCATACCCTGATCTGAAATTACGCGCCTTAGTTCCCTTAGCCGAGGCTGTCACTTTCTCCATCACTCTCACCTGAAAGGAGCGGACTGACTGCGCAACCATGGGGTATGGGCGATCGGACAGCTACCGCGTGGCCACCACGCAAGACAAAGATGAAAAAGGTTCTCCAAAGAAGAAAAAGGGGGCAAAGGATCTCGATGATCTGAAGAAAGAAGTTCCCCTTACAGAACACAAGATGTCAGTCGAGGAAGTATGCCGGAAATTTCAGACAGACATTGTTCAGGGTTTAACCAATGCAAAGGCCAGAGACTTTCTGGCACGCGATGGGCCAAATGCTCTGACCCCACCACCTACAACACCCGAGTGGGTTAAATTCTGTCGTCAGCTGTTCGGAGGCTTCTCCATCTTGCTTTGGATTGGAGCCATTCTCTGCTTCCTGGCCTATGCCATCCAGGCTGCAACCGAAGATGATCCAGCTGGAGATAATTTGTACCTGGGAATCGTCCTGTCTGCCGTGGTCATCATTACTGGCTGCTTCTCCTACTTCCAGGAGGCAAAGAGCTCCAAGATCATGGAGTCCTTCAAAAACATGGTGCCCCAGCAAGCATTAGTGATCCGTGAAGGGGAGAAGATGCAGATCAATGCTGAGGAAGTGGTTGCAGGCGACCTGGTGGAGGTCAAAGGTGGAGACCGAATCCCTGCTGACCTCAGAATCATCTCTGCTCATGGATGCAAGGTGGATAACTCCTCCCTGACTGGCGAATCAGAACCTCAGACAAGATCACCTGACTGCACTCATGATAATCCTCTGGAAACCCGTAACATCGCTTTCTTCTCCACCAACTGTGTGGAAGGCACTGCTCGTGGTGTTGTGGTCTGCACTGGTGACCGCACAGTGATGGGCCGCATCGCCACACTGACCTCAGGACTGGAGACAGGGAAAACACCCATCGCCAAGGAGATCGAGCACTTTATTCATATCATCACAGGCGTAGCCGTCTTCCTAGGCGTGAGCTTCTTCATCCTGGCCGTCATTTTGGGATACACCTGGCTGGAGGCTGTCATTTTCCTTATTGGGATCATCGTCGCTAATGTGCCTGAGGGTCTGCTGGCTACTGTCACTGTGTGTCTCACTCTGACTGCCAAGCGAATGGCTCGCAAGAACTGCCTGGTTAAGAATCTGGAAGCCGTAGAGACGCTGGGATCCACCTCAACGATCTGCTCAGACAAGACTGGAACTCTGACCCAGAATCGAATGACTGTGGCACACATGTGGTTTGACAATCAGATCCACGAAGCCGACACCACTGAAGATCAGTCAGGTGCGTCGTTTGATAAGAGCTCTGTGACTTGGGTGGCTCTGGCCCGTGTGGCGGCTCTGTGTAACAGAGCTGTGTTTAAGGCGGGACAAGACTCTCTGCCCATTCTCAAGAGGGACGTAGCTGGTGACGCTTCTGAGTCTGCCCTGCTTAAGTGTATCGAGCTGTCCAGTGGCTCAGTCAAAGCAATGAGAGAAAAGAACAAGAAAGTAGCCGAAATCCCATTCAACTCCACCAACAAATATCAGCTGTCCATCCATGAGACAGAGGACAATAATGATAACCGCTACCTATTGGTGATGAAGGGGGCTCCAGAGCGCATCTTAGACCGTTGTTCCACCATCATGCTGCAGGGCAAAGAGCAGCCTATGGACGAGGAGATGAAGGAGGCCTTTCAGAATGCCTACCTGGAGCTTGGAGGACTTGGAGAGCGAGTGCTGGGATTCTGCCATGTCTTAATGCCTGAGGACCAGTACCCGAAAGGTTTCGCCTTTGACACCGATGATGTCAATTTCCAGACAGACAACCTTTGCTTTGTGGGCTTGATGTCTATGATTGACCCTCCCCGTGCTGCCGTGCCTGATGCTGTGGGAAAGTGCCGTTCCGCTGGAATCAAAGTCATCATGGTGACAGGAGATCACCCCATCACTGCCAAGGCCATCGCCAAGGGTGTGGGCATCATCTCAGAGGGTAACGAAACTGTGGAAGACATCGCTGCCCGTCTCAACATCCCTGTCAGTCAGGTCAATCCCAGGGATGCCAAAGCCTGTGTTATACATGGAACAGATCTGAAAGACTATTCTCAGGAGCAAATAGATGAAGTTCTGCGAAACCACACTGAGATTGTGTTTGCCAGGACGTCTCCCCAGCAAAAACTTATCATTGTAGAAGGCTGCCAGCGACAGGGGGCCATCGTGGCTGTAACAGGTGATGGTGTGAATGACTCTCCAGCCCTGAAGAAGGCTGATATCGGCGTCGCTATGGGCATTTCTGGCTCTGATGTGTCTAAACAGGCTGCTGACATGATTTTGCTGGATGACAACTTCGCCTCCATCGTCACTGGAGTAGAAGAAGGTCGACTCATCTTTGATAATTTGAAGAAGTCTATTGCGTACACCCTGACCAGCAATATCCCTGAGATCACCCCATTCCTGCTGTTTATTATTGTCAATATTCCCCTGCCCCTCGGCACCATCACCATCCTCTGTATCGACCTGGGAACTGACATGGTACCTGCAATTTCTTTAGCTTATGAAGCAGCTGAGAGTGACATCATGAAGAGGCAGCCCAGGAACCCTATGAGAGACAAACTTGTGAACGAACGTCTCATCAGCATCGCTTATGGACAGATCGgtaTGATCCAGGCATTGGGTGGTTTCTTTGCCTACTTTGTGATTTTGGCTGAGAATGGTTTCTTGCCCTCGCTGCTTGTGGGGATCAGGCTGAACTGGGATGATCGCGCGATGAATGACCTGGAGGATAGTTATGGACAGCAGTGGACATATGAACAGAGGAAGATTGTTGAGTTCACGTGCCACACAGCGTTCTTCGTCAGTATTGTGGTTGTGCAGTGGGCTGATGTCATCATCTGCAAGACCAGACGCAACTCAGTGTTCCAGCAGGGCATGAAGAATAAGATTCTGATCTTTGGGCTGTTTGAAGAAACTGCTCTCGCTGCATTCCTCTCCTACTGCCCAGGCATGGATGTGGCACTCAGGATGTACCCGCTCAAGCCGAGCTGGTGGTTCTGTGCTTTCCCATACAGTTTCTTAATCTTTGTTTATGATGAGGTCCGAAAGCTGCTCCTGCGCCGGAACCCTGGTGGCTGGGTGGAAAAGGAGACCTACTATTGATCAGCAGCTCTTCCGTGCTCAAGTCCCCAACATCCTCCATTTGTTTCCATCTCTTCTCTCTTCCCCAAACCGAGACGCACAACCGTCCCCCTTTCCAGCCCTCCTTTCAGAGAGACAGCAGCTTTAACCCCCGAAAAGGAAAAACACACTCTCGCCCCACAATTTCCTATAATACTCTTTGCATGTATTTTCACACGGCTGTGTACATAAAGTCTACTATATATCTAAAACCGGCAGCTGCATAACCATCATGTAGGTTGGAAAGGAGCTTTTGTCGCTATAAAGGGAATATGTACGCTTGCCTATTTAAACAAAAGACTGTCCCTCCATAAGCCCATGCCTTTCCctccagtcacacacacacagttcacacAGAACACCTCTACACATACTCTAGACTGCGTTTGACATAATAGTCCCTCGTTTTCATGTTTTGTTCTTTAATTGAGCTCTTTAATCTCTGGTGGATTTTGGTGGCTTtgaattgtttatatttattttgattttctacTTCAGTTTCATCATTGTCGTCCTCTTGTACTTTCTCGTTCGCTTTTTTTTTggggtttgtgtgtttgtttgaccACTACAGTAATGCAATACGATTCAGTAGAGTTCCCGTTTCTGTGTTTTAGGGAAAATGTAAGCAATACTacattgaataaacaaataaatcatatcTTGGAAGGTAAAACAGCAGTGGgagacagtgtttctcaaccatgttcccgGATGACCACCAGCTCTGCCCATTTTTCTTGTCTcctcaatcaaacacaccttcatcagctcattagcggagactgaaagacctgtaatgggtgtgacagacaaaggagacatccaaagtatgcagtgttggtggtcttccaggaacgtggttgagaaacactgctttaaaggaTTCTCTCACTTGAATTTGTTCAGCTGAAATGTCCAGAAGGCTAGTTCAGACATCTCTTGTATTAAATCTACTGCCGATATGAACCTAAAGACACCAGGTTTTATCGTTTTCCCTCTTAATTCCAGCTGTTTTGATACATTAACTGTTGACAGTATAGATTTAACTTTTATCAGCCATATCAAACCTTTGTTCTGATGTAGGACACAAACTTTGTTGTCGAAATCATTTTGAGCCTGGTGTGTGCAGGTTTCACCGCTGGTTTATCAGGAGATGCgatggctgtgtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgagggacgGTGCGCTGTTGCAGTCGGCGGATTATGTGTGGATGTGGAGATTAAAGACAGAAAGACAAAACTACTGGTAGAAACATGTATATGAAAGGTCAAACCCAATAAAACATCTAGTACATTTAATATTA
>TCONS_00019469
AGACCGGCATCCCTGCGAAATGCACTGCCTCGCCGTCGAATTTGCTTTGAACATTTAGTTTTAACCTTAACAAATTTGGCAGGTTCCTTAAATTAATGTTGCAACGAGTAACTTCTGTCATACCCTGATCTGAAATTACGCGCCTTAGTTCCCTTAGCCGAGGTAAAGAACTAAAACCAAGTTTTAAAGCAAGTGTTTTGTGTTTCTAAAGATTATATTTCATGACTGACATTCTCTCTTCGTGAAAGGCTGTCACTTTCTCCATCACTCTCACCTGAAAGGAGCGGACTGACTGCGCAACCATGGGGTATGGGCGATCGGACAGCTACCGCGTGGCCACCACGCAAGACAAAGATGAAAAAGGTTCTCCAAAGAAGAAAAAGGGGGCAAAGGATCTCGATGATCTGAAGAAAGAAGTTCCCCTTACAGAACACAAGATGTCAGTCGAGGAAGTATGCCGGAAATTTCAGACAGACATTGTTCAGGGTTTAACCAATGCAAAGGCCAGAGACTTTCTGGCACGCGATGGGCCAAATGCTCTGACCCCACCACCTACAACACCCGAGTGGGTTAAATTCTGTCGTCAGCTGTTCGGAGGCTTCTCCATCTTGCTTTGGATTGGAGCCATTCTCTGCTTCCTGGCCTATGCCATC
>TCONS_00019470
GGACTGACTGCGCAACCATGGGGTATGGGCGATCGGACAGCTACCGCGTGGCCACCACGCAAGACAAAGATGAAAAAGGTTCTCCAAAGAAGAAAAAGGGGGCAAAGGATCTCGATGATCTGAAGAAAGAAGTTCCCCTTACAGAACACAAGATGTCAGTCGAGGAAGTATGCCGGAAATTTCAGACAGACATTGTTCAGGGTTTAACCAATGCAAAGGCCAGAGACTTTCTGGCACGCGATGGGCCAAATGCTCTGACCCCACCACCTACAACACCCGAGTGGGTTAAATTCTGTCGTCAGCTGTTCGGAGGCTTCTCCATCTTGCTTTGGATTGGAGCCATTCTCTGCTTCCTGGCCTATGCCATCCAGGCTGCAACCGAAGATGATCCAGCTGGAGATAATTTGTACCTGGGAATCGTCCTGTCTGCCGTGGTCATCATTACTGGCTGCTTCTCCTACTTCCAGGAGGCAAAGAGCTCCAAGATCATGGAGTCCTTCAAAAACATGGTGCCCCAGCAAGCATTAGTGATCCGTGAAGGGGAGAAGATGCAGATCAATGCTGAGGAAGTGGTTGCAGGCGACCTGGTGGAGGTCAAAGGTGGAGACCGAATCCCTGCTGACCTCAGAATCATCTCTGCTCATGGATGCAAGGTGGATAACTCCTCCCTGACTGGCGAATCAGAACCTCAGACAAGATCACCTGACTGCACTCATGATAATCCTCTGGAAACCCGTAACATCGCTTTCTTCTCCACCAACTGTGTGGAAGGCACTGCTCGTGGTGTTGTGGTCTGCACTGGTGACCGCACAGTGATGGGCCGCATCGCCACACTGACCTCAGGACTGGAGACAGGGAAAACACCCATCGCCAAGGAGATCGAGCACTTTATTCATATCATCACAGGCGTAGCCGTCTTCCTAGGCGTGAGCTTCTTCATCCTGGCCGTCATTTTGGGATACACCTGGCTGGAGGCTGTCATTTTCCTTATTGGGATCATCGTCGCTAATGTGCCTGAGGGTCTGCTGGCTACTGTCACTGTGTGTCTCACTCTGACTGCCAAGCGAATGGCTCGCAAGAACTGCCTGGTTAAGAATCTGGAAGCCGTAGAGACGCTGGGATCCACCTCAACGATCTGCTCAGACAAGACTGGAACTCTGACCCAGAATCGAATGACTGTGGCACACATGTGGTTTGACAATCAGATCCACGAAGCCGACACCACTGAAGATCAGTCAGGTGCGTCGTTTGATAAGAGCTCTGTGACTTGGGTGGCTCTGGCCCGTGTGGCGGCTCTGTGTAACAGAGCTGTGTTTAAGGCGGGACAAGACTCTCTGCCCATTCTCAAGAGGGACGTAGCTGGTGACGCTTCTGAGTCTGCCCTGCTTAAGTGTATCGAGCTGTCCAGTGGCTCAGTCAAAGCAATGAGAGAAAAGAACAAGAAAGTAGCCGAAATCCCATTCAACTCCACCAACAAATATCAGCTGTCCATCCATGAGACAGAGGACAATAATGATAACCGCTACCTATTGGTGATGAAGGGGGCTCCAGAGCGCATCTTAGACCGTTGTTCCACCATCATGCTGCAGGGCAAAGAGCAGCCTATGGACGAGGAGATGAAGGAGGCCTTTCAGAATGCCTACCTGGAGCTTGGAGGACTTGGAGAGCGAGTGCTGGGATTCTGCCATGTCTTAATGCCTGAGGACCAGTACCCGAAAGGTTTCGCCTTTGACACCGATGATGTCAATTTCCAGACAGACAACCTTTGCTTTGTGGGCTTGATGTCTATGATTGACCCTCCCCGTGCTGCCGTGCCTGATGCTGTGGGAAAGTGCCGTTCCGCTGGAATCAAAGTCATCATGGTGACAGGAGATCACCCCATCACTGCCAAGGCCATCGCCAAGGGTGTGGGCATCATCTCAGAGGGTAACGAAACTGTGGAAGACATCGCTGCCCGTCTCAACATCCCTGTCAGTCAGGTCAATCCCAGGGATGCCAAAGCCTGTGTTATACATGGAACAGATCTGAAAGACTATTCTCAGGAGCAAATAGATGAAGTTCTGCGAAACCACACTGAGATTGTGTTTGCCAGGACGTCTCCCCAGCAAAAACTTATCATTGTAGAAGGCTGCCAGCGACAGGGGGCCATCGTGGCTGTAACAGGTGATGGTGTGAATGACTCTCCAGCCCTGAAGAAGGCTGATATCGGCGTCGCTATGGGCATTTCTGGCTCTGATGTGTCTAAACAGGCTGCTGACATGATTTTGCTGGATGACAACTTCGCCTCCATCGTCACTGGAGTAGAAGAAGGTCGACTCATCTTTGATAATTTGAAGAAGTCTATTGCGTACACCCTGACCAGCAATATCCCTGAGATCACCCCATTCCTGCTGTTTATTATTGTCAATATTCCCCTGCCCCTCGGCACCATCACCATCCTCTGTATCGACCTGGGAACTGACATGGTACCTGCAATTTCTTTAGCTTATGAAGCAGCTGAGAGTGACATCATGAAGAGGCAGCCCAGGAACCCTATGAGAGACAAACTTGTGAACGAACGTCTCATCAGCATCGCTTATGGACAGATCGgtaTGATCCAGGCATTGGGTGGTTTCTTTGCCTACTTTGTGATTTTGGCTGAGAATGGTTTCTTGCCCTCGCTGCTTGTGGGGATCAGGCTGAACTGGGATGATCGCGCGATGAATGACCTGGAGGATAGTTATGGACAGCAGTGGACATATGAACAGAGGAAGATTGTTGAGTTCACGTGCCACACAGCGTTCTTCGTCAGTATTGTGGTTGTGCAGTGGGCTGATGTCATCATCTGCAAGACCAGACGCAACTCAGTGTTCCAGCAGGGCATGAAGAATAAGATTCTGATCTTTGGGCTGTTTGAAGAAACTGCTCTCGCTGCATTCCTCTCCTACTGCCCAGGCATGGATGTGGCACTCAGGATGTACCCGCTCAAGCCGAGCTGGTGGTTCTGTGCTTTCCCATACAGTTTCTTAATCTTTGTTTATGATGAGGTCCGAAAGCTGCTCCTGCGCCGGAACCCTGGTGGCTGGGTGGAAAAGGAGACCTACTATTGATCAGCAGCTCTTCCGTGCTCAAGTCCCCAACATCCTCCATTTGTTTCCATCTCTTCTCTCTTCCCCAAACCGAGACGCACAACCGTCCCCCTTTCCAGCCCTCCTTTCAGAGAGACAGCAGCTTTAACCCCCGAAAAGGAAAAACACACTCTCGCCCCACAATTTCCTATAATACTCTTTGCATGTATTTTCACACGGCTGTGTACATAAAGTCTACTAT
>TCONS_00019471
TTCTCGTTCTGTCTCTCAGGGGGCCATCGTGGCTGTAACAGGTGATGGTGTGAATGACTCTCCAGCCCTGAAGAAGGCTGATATCGGCGTCGCTATGGGCATTTCTGGCTCTGATGTGTCTAAACAGGCTGCTGACATGATTTTGCTGGATGACAACTTCGCCTCCATCGTCACTGGAGTAGAAGAAGGTCGACTCATCTTTGATAATTTGAAGAAGTCTATTGCGTACACCCTGACCAGCAATATCCCTGAGATCACCCCATTCCTGCTGTTTATTATTGTCAATATTCCCCTGCCCCTCGGCACCATCACCATCCTCTGTATCGACCTGGGAACTGACATGGTACCTGCAATTTCTTTAGCTTATGAAGCAGCTGAGAGTGACATCATGAAGAGGCAGCCCAGGAACCCTATGAGAGACAAACTTGTGAACGAACGTCTCATCAGCATCGCTTATGGACAGATCGGTTGGTCTCATTCTGCATGAAACTGTAGATTTGGCTTCATTTTAAGTCAATGTGCCATATTAAAAAGGGTAGTTAGCTTTGTTagcaagttatttttatttattaattttttttattcattgaaATCATGGAAATGAAGAAAATTCTGGGGGAAAATCATACTTCTACgctgatttaatagattttttttca

Function

symbol description
atp1a3b Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within locomotory behavior and ventricular system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural tube; pronephric duct; and skeletal system. Human ortholog(s) of this gene implicated in alternating hemiplegia of childhood; bipolar disorder; dystonia 12; and epilepsy. Orthologous to human ATP1A3 (ATPase Na+/K+ transporting subunit alpha 3).

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0021591 ventricular system development biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0007626 locomotory behavior biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001212-8 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within locomotory behavior and ventricular system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural tube; pronephric duct; and skeletal system. Human ortholog(s) of this gene implicated in alternating hemiplegia of childhood; bipolar disorder; dystonia 12; and epilepsy. Orthologous to human ATP1A3 (ATPase Na+/K+ transporting subunit alpha 3).

Ensembl:

ensembl_id ENSDARG00000104139

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019468 False 4787 mRNA 0.48 22 10776688 10820909
TCONS_00019469 False 653 mRNA 0.46 4 10776831 10798986
TCONS_00019470 False 3309 mRNA 0.51 21 10777116 10819773
TCONS_00019471 True 659 lncRNA 0.43 3 10812796 10813628

Neighbor

gene id symbol gene type direction distance location
XLOC_009725 zgc:165409 coding upstream 42388 10724406 ~ 10734300 (+)
XLOC_009723 si:ch73-22o12.1 coding upstream 138668 10557504 ~ 10638020 (+)
XLOC_009724 NA coding upstream 159002 10617354 ~ 10617686 (+)
XLOC_009722 vars1 coding upstream 300874 10429770 ~ 10475814 (+)
XLOC_009721 ino80e coding upstream 347789 10422836 ~ 10428899 (+)
XLOC_009727 dedd1 coding downstream 20254 10841163 ~ 10863041 (+)
XLOC_009728 pou2f2a coding downstream 97343 10918252 ~ 10991240 (+)
XLOC_009729 erfl3 coding downstream 208853 11029762 ~ 11142797 (+)
XLOC_009730 cicb coding downstream 330790 11151699 ~ 11224444 (+)
XLOC_009731 gsk3ab coding downstream 421534 11242443 ~ 11292148 (+)
XLOC_009719 CU929328.1 non-coding upstream 386901 10387719 ~ 10389787 (+)
XLOC_009718 NA non-coding upstream 396867 10378331 ~ 10379821 (+)
XLOC_009715 FP016064.1 non-coding upstream 452023 10324549 ~ 10324665 (+)
XLOC_009712 NA non-coding upstream 759975 10012335 ~ 10016713 (+)
XLOC_009733 NA non-coding downstream 540851 11361760 ~ 11376845 (+)
XLOC_009736 NA non-coding downstream 752280 11573189 ~ 11578407 (+)
XLOC_009737 NA non-coding downstream 759743 11580652 ~ 11583878 (+)
XLOC_009751 NA non-coding downstream 1296722 12117631 ~ 12139336 (+)
XLOC_009755 CR388102.1 non-coding downstream 1479260 12300169 ~ 12300286 (+)

Expression


Co-expression Network