G219880


Basic Information

Item Value
gene id G219880
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5103527 ~ 5103756 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU249394
TTGGAACGTAGGAGAATACAAATACCACATCAACATAAAAAAATACCGGACAAAGAATACAAAGGGAGAGTTAATTAACAGAACTAGGAACAGGTGTAGGGTTAATTAAGAACCAAGGAAACTAACTAGGGACACAGAACACAGGCAAATGAGAACAGGAAACACAGTAAAATCAAAACCAAAACAGAACATACACGTTACAGACAGCCCTTGCAAAAAATAATTACAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249394 True 230 lncRNA 0.36 1 5103527 5103756

Neighbor

gene id symbol gene type direction distance location
CI01000051_05072860_05074568 GLRX5 coding upstream 28653 5072629 ~ 5074874 (+)
CI01000051_04796878_04799272 FLRT2 coding upstream 304206 4796878 ~ 4799321 (+)
CI01000051_04763063_04778692 NA coding upstream 324445 4762496 ~ 4779082 (+)
CI01000051_04419475_04464134 NA coding upstream 639361 4419270 ~ 4464166 (+)
CI01000051_04374052_04393328 NA coding upstream 709850 4372658 ~ 4393677 (+)
CI01000051_05126681_05142536 NA coding downstream 21995 5125751 ~ 5142617 (+)
CI01000051_05174862_05175926 NA coding downstream 70352 5174108 ~ 5176507 (+)
CI01000051_05254556_05270993 MEIS2B, MEIS2 coding downstream 150800 5254556 ~ 5271828 (+)
CI01000051_05296858_05301152 NA coding downstream 192928 5296684 ~ 5301334 (+)
CI01000051_05314994_05317995 ACTC1B, ACTA2, ACTA1, MGC53823, ACTC1, MGC75582, ACT3, ACTC1A, ACTA1A, ACT2, ACTC1.L coding downstream 210688 5314444 ~ 5318185 (+)
G219877 NA non-coding upstream 7327 5095978 ~ 5096200 (+)
G219806 NA non-coding upstream 31390 5071617 ~ 5072137 (+)
G219868 NA non-coding upstream 33619 5069684 ~ 5069908 (+)
G219867 NA non-coding upstream 34246 5069064 ~ 5069281 (+)
G219866 NA non-coding upstream 34807 5068458 ~ 5068720 (+)
G219881 NA non-coding downstream 1166 5104922 ~ 5105147 (+)
G219895 NA non-coding downstream 40915 5144671 ~ 5144882 (+)
G220701 NA non-coding downstream 73582 5177338 ~ 5177567 (+)
G220725 NA non-coding downstream 95018 5198774 ~ 5198997 (+)
G219803 NA other upstream 51494 4914974 ~ 5052033 (+)
G218981 NA other upstream 1856654 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 3037444 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 4378823 637590 ~ 720669 (+)
CI01000051_06825895_06830637 NA other downstream 1722043 6825895 ~ 6830637 (+)
G221319 NA other downstream 2238285 7342041 ~ 7342546 (+)
G221386 NA other downstream 2305767 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 3001887 8209722 ~ 8214696 (+)
G222727 NA other downstream 3239186 8342942 ~ 8343448 (+)

Expression


Co-expression Network