XLOC_009732 (znf574)


Basic Information

Item Value
gene id XLOC_009732
gene name znf574
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11297703 ~ 11344727 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019485
AATCACGGTGCGTTTTGTTGAGACgttcaaaaaaacatttctgacaGATACGAAAGGAGAAGGCCGTAATCGGccATGGAGTCCTCTTCAGTGTATATGTGTTTTCCCTGTTATCGGGAGTTTCCTACGCTGGAAGAAGTGCTTGCACATCAGATGACCTGCACTGCAGAGAACCCACAACTCCTGCCCAATGAGACGCCAGTTGAAGCAGCAGCAGCTGCCGCCGGCCTACCACAGGTGGCGATGCAGGCTGTGACGGTTCCCCAAATTCAAACTCAGACAGCTGTTGATCTGTCTTCCCTGCTTCAGCAGAAGAAAACTATTCAGGCGGATGCTCCGCGTGTGCTGTACCAGTGCGCTGACTGCGAGGTCCTCTTTGATGCTTTGTCATTGTGGCAGCAGCACCGTAAGATGGGCTGTTGCCTCGAGACAGAACCTGCAGGAGAGCAGACTGAAGAAACGTATGAAGCAGTTGCCCAACCGCAGcccagccaaaaagaaaatgaaaacgcCGTGCAGGAACAAAATACGCCTGAACAAACCCAGGTCAAAGAAGTGGTGGAAATTAGATTCGAGAGCGTTAGTCAGGGGTCGGTGGAAGTTGCTGGAAAAGTAGCAGCGCCTGCGACCTCTGAGGAGGAAGAATCGAGCAACAGTGTCTCCAAGGAGGCCTCGGCCACTCATGAGGCTTCGTCTGTGGAGACCTCAGCTGAAGCGAGCAGTCCTGCCACGAGGCGCAGGGGGCAGAAGAAGGCCAAACCCCCCTCCAGCCTGCTCTGTGTGGAGTGTGGACAAAGCTTCAGTCTGGTTCCAGAGCTCGTGACTCACCGCAGGACTCAACATGGCTTGAAAGATGCCATACACCGCTGTGCTGTCTGTGGAGAGGGCTTCCTCAACACCACGCTTTTCCTTTACCATCGCAGGCAGCACCGTTCAGAAGTTGAGGAGGAACCCAAGCAGGCTTCATCTGGCATCCCTCAGATCTCCACAGCCATGCTGGAGGCCCCAGGAGAGGGCCTCCTGCTTTTGGCAACAGCTGGAGAAGGCCAGAGCCTGATGGAGGTGACCACTCTGGAGCAAACCATCACTGAGACCCCTGTAGCGCAAGTGGAGGTTGAGCTGGAAGGCAACGAGATACGAGGAACCGAACAGGAGCCCATGGTTGAAGGAGCAGAGATATTGGTGGAGAAGACTGAGGAGATGCTGGAGGAGCATGAAGCACCTGACCAGGAGGTAAAAATGGAGTTGGTCATTGAGAAGGTTGAAGGAAATGTGCAGATGGAGAAGATTGGTGCGGATGAGGAGATCCAGGATGCGGTGGAGAGTAACGCTTCAGAGAACACATCCACTGCTTTCCTCTGCCATCAGTGTGGATCTGTTTTTAGCAATGATCAGGAGCTGGCCAAGCACCGTAAAGCTGAGCACGGCCTGGAGGCGGCGCTGCACACTTGTGGAGACTGTGGGGCTAAGTTTATGAGTACCACACAGTTCCTGTACCATCGGCGGCAGCATAAGAACACAACTGCGGGACATCTAgtcacagctgaagtcaaaagCAGACTTTACACTACTGCAGCTTCAGCAAcaggagcagcagcagcagacggTGGTCTTGAAGCCCCTGCGAAATTGAGCCGTGAATGGTCACGCACCGCTCTGCCCCACGAGTGCCCCCATTGTGGCCAGGGCTTTACTCGCCGCAGCCGTCTGCGCGAGCATGTGTTCCAGCACACGGGCGAGAAACTCTTCAACTGCAAAATCTGCAAAAAGAGCTTCCCGTCTCCAGCCAACCTGCTGCGTCACAGCCTGATCCACGGAGGATCCCGCATCTACAGCTGCCCCATATGTGACAAGCGCTTCTTCCAGCCCACATCCCTCAAACGCCACATGATGACTCACCAGGAGGGAGTCCAGGAGCGCAGGACTCGAGGCAGAGGGAAAGGTAGGGGACCATCAAGTGATGGCCGTCTACACATCTGCCCAGAGTGTCCGGCCAGTTTCAAGTTAGAGGCCCAACTGAAGAGTCACAGACTCCTACACACCAGCCACCCGTTCCCTTGCAGTGTGTGCGGAGAGGCTTTTATACGACGCAAAGAGCTGGACCTGCACTCTCTCATCCACCAAGACAAAGAACCAAAGATGTGTCCAAACTGCGGCTCTCAGTTCCTGAATCAGACAGTGCTGGACACACACCTGCAGCGCTGCACGGGGGAGCAGACGGGACAGCGCAAATATAAAGGGCAGGGAAGAGGCAAGGTAGGAGGTCAGCTGGAGTGTGACATGTGTGGGCACCGCTGCGTGACTCAGGACGGACTGGACCTGCACCGTCTCTCCCACACGGGTCAGACACCCCTGCGGTGCCCGCTCGCCCCCTGCAGACGCCGCTTCGCCTCTAGTGCTGCTTTAGGGGAACATCTGGTCGCCCACTGCTGCGGAGCCCTGGGCAAGAGAAACGCCCCGCGCCGCTTCACCTGCGAGTTCTGCGGCAAGGAGTTTGCCTATGCCTCAACTTTCACTGTTCACATGAGGACACACACCAACGAAAGACCCTTCGAGTGTGCTCAGTGTGGCAAGCGTTTCCGGCAGCTTCCACACTTGCAGGACCACGAGCGCATCCACAGCGGCGAGCGGCCCTTCACCTGCTGGGTGTGCGGGAAGAGCTTCAGCGTGGCGGCGAGGCTGACGGAGCACGCGCGGGTTCACAGCGGCGAGAGGCCGTACGTCTGCCCCCGCTGTCCCACCGCCTTCCGCTCACGGCCAAACCTCGACAAGCACATGCGCATTCACGCCAACGACCCCGTGGACCCCACCGCTCAGAACGTCATGGATGATGATGCCGCGGTGCAGACCATCCTCCTGGTGCAGGAGTCGGCATCGTCTTCACCCTCGTCCTCCTCGTCTGTCATGCCCGTGGTCCAGGAGGGCATGTTCGTGACAGAAGAGGGAGGTTCATCTGTGGTTTTCCTGCACCCCAATATGAGTATGCCCACCATCACTGTGCCAGCCATTTCTGTGCCCTCCATGAATATGCCCAACATCTCTGTTGTAGCAGGTCAGGATGTTCCTCACACTATTGAGGTCATCTTAGAGGAGACTGTGTGA

Function

symbol description
znf574 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within definitive hemopoiesis. Is expressed widely. Orthologous to several human genes including ZNF212 (zinc finger protein 212).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-259 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within definitive hemopoiesis. Is expressed widely. Orthologous to several human genes including ZNF212 (zinc finger protein 212).

Ensembl:

ensembl_id ENSDARG00000087074

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019485 True 3102 mRNA 0.56 7 11297703 11344727

Neighbor

gene id symbol gene type direction distance location
XLOC_009731 gsk3ab coding upstream 5555 11242443 ~ 11292148 (+)
XLOC_009730 cicb coding upstream 73259 11151699 ~ 11224444 (+)
XLOC_009729 erfl3 coding upstream 154906 11029762 ~ 11142797 (+)
XLOC_009728 pou2f2a coding upstream 306463 10918252 ~ 10991240 (+)
XLOC_009727 dedd1 coding upstream 434662 10841163 ~ 10863041 (+)
XLOC_009733 NA coding downstream 17033 11361760 ~ 11376845 (+)
XLOC_009734 grik5 coding downstream 139084 11483811 ~ 11555934 (+)
XLOC_009735 zgc:198329 coding downstream 214141 11558868 ~ 11569729 (+)
XLOC_009736 NA coding downstream 228462 11573189 ~ 11578407 (+)
XLOC_009737 NA coding downstream 235925 11580652 ~ 11583878 (+)
XLOC_009724 NA non-coding upstream 680017 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 907916 10387719 ~ 10389787 (+)
XLOC_009718 NA non-coding upstream 917882 10378331 ~ 10379821 (+)
XLOC_009715 FP016064.1 non-coding upstream 973038 10324549 ~ 10324665 (+)
XLOC_009712 NA non-coding upstream 1280990 10012335 ~ 10016713 (+)
XLOC_009751 NA non-coding downstream 772904 12117631 ~ 12139336 (+)
XLOC_009755 CR388102.1 non-coding downstream 955442 12300169 ~ 12300286 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_04666701_04684512 NA coding CI01000016 null 4665922 ~ 4684837 (+)