G220916


Basic Information

Item Value
gene id G220916
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5741058 ~ 5744465 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU250559
CCACACTGTAAAAAATGGATAATGTACTGGCAGAACATTACCAGGACATTATCCAGTGAGTTTGATCAAAGTTGGAGCTAAACTCTGCAGGAAAGTGGAACTTGAGGGCCAAAATTGAGAACCCCTGCACTACACACTTGTAATTCATTTCATACACACATGGGTATATTAATTTGCCCTATTTAGGCCGTAGTACATATGCATACTGTTCTGTGTCGTAATATGTTGCACATTGTCATTTTGCAATTCATTGTCTCATAAAGATAAAGCATCAAGGTCAATTCAAGGAACATCATTTCATTCCTCTTCCACACCTATTGTACCCAGGAAAGCCTCTGGAAAAGAATCATTTTTGCTCGGTTATTTAGTACATAGACAATAATGGTTTTTATCTGTTTCTTTTCTTATTTGAAGGGTGATAAATAACGTGACAACAGTCCAGTTTTTCAAGAAGGAGGTTGTGCAGTGTCCTGACTGACGTTGCATGACTTAAAATATGAAAATGTACTTATTCTCATGTCATTTCAAGCCTGTGAGACTTTAACGTGAAACACTAAAAGAGAAATTTGGAATAAAGTTCTGGCCCTGCTTCTTCACATAATGAAAGACAATGTAGAAATAACTCATAACGATTTGTGCTGTACATTTCAAGTCTTGTGATATAAGAAACAGAGTTATATTTATTTTATCTTTTGACAATCTTGTTCTCCACTGTCCGCATCCATCCAATTAAAATATGGCTCTTTTGGACGCAACATCTATGATGTCACTAATTCTATTTAAATATTTATGGAGCCCCTAAGGGGACAGGATAGAAAAAATATGTGATGGGAGGGAAAAGCATATTTCAGTGGTTTTTAGCTCTCTCTCAAGAGTATTGCATTCCCCTGAGCAACAAAAGTTTTGCAAGAGAATGCAATATCCCATCTCTGTTTTGTTTTTTTCTTCTTCTTTTTTCTCACCATGTCCCTTTAGGGGATCCGTGTTCTAAGTAAATAGTGACTTAAATATGGATGTGTTACTTGCACAAAGATATTGTGTGACTTCAGAGGACTTGGAATGTAGCTCCCAAGTCAAATTATGTAGCCTCTTGAAACAGCTCTGATTCTGTGTTCTACATGTGGTTTTGGAATGACATGAGGGGTCAGTAATTATTTATTTATTTATTTATTTTAGTGAACTATGCCTTTAAGTCTTCATGTCTTGGAACTGCTGATCTAGATCTGCTTATCAAATATGGGAAGACGTTTCTGACAGCATAGACCTCAGGTAAGCCTTTTCATACTATGCATTAATAAAAATATGGTTACCACTTTTTTTGTTTTAAAGACATATTTTTGGACATTTTAAACAAATATCTATCATTTAAAATAAAGATTATTTCTCATCCAACTTGTGGTCTTGTTTTTAATCACATTGAGTTATAAATGCATATAGCAAGACTTTTAGCAAAAAACTGCAAAAGGAGAAGCAGTCCACCTAAATAGCAGATACCATATAATACACAAAAATGGAAAACGGGCACTGGACATACATATTACAATATAACAAATAAAATATTCTCACTCAGTTACCCCTAGATGGATTATACCAATATTTATAGGTCTATACATGGTAGAACCAATTGCAGTTGCAATCTACCTCACCCTACATAAATATTCATAATCAATTCTAAATGTTATAATATAACAGTCTGTTCACTAAATGATTGGTACAGTATTCATCTCAACACAACCTAGTGTTAAGGTGTTAACCTACACACATATTTCATTATTGTCATGGTTGTTTTAAAGCAACGTTGGTGCACTTTTGTTGTGTGTCTGTTGTTGTAATGTTTTGGTTATGGCTGGTGATGCAAAACTGTCAAGCAGCTTTGTATGAAAAAAACCCATTCACAGTAGCAGGGTGGTTCAGACTTGCTTGCCTGAAGCAAAAAATCAATAAAATGATTACAGAACTAATTTTAAATACCTTAGTGCTGAAAACACTGGTTTTACTAATAGGTAACTTAATGTTAACTATTAACAATTAACTCAAATGCATCTACCAACAATTCTGTAAGACAATATATAAAAACAATAATCAATACTGTCAGACAAATTAATGTTTTCATATTCTCTAAAAAATTAGACAGCCATGCAAATGGCAAAACATGTAATTACACGCCAATTAAAACAAAATGTAATAGTTATGACCATTGTATATATGCAATAGGACATGTATGTAGGACATGTATGTATGCAATAGGACATGTATGTGTTAAATGTATGATATGTTGACAGTTGTTTTGTTTTAAATTACCTACAGTATATATCACTACAAATAATAAAACCTGAAACAAAATGTTTTTTAATTTTATTTGGTCCCCTAATAAAAAACATGTGAATGTACTCAGTAAATAATGAAATCTTATTAATCTTAAACAGTTAAATCTAAGAACATTTTCAGATGAATGAATATTTTATGGCAAAGACATATCACAGCTTTGAGGCACAAATGTTTAGAGTATGACTTCATATCCTGTAATGGTTTAGTCAGAGGGAAGAGCCTGTAGGACAGCCTGTGGCACTCTGCTTAAATAGTACTGATGATCCTTTAGTGTCGCCAGAACTCCAGCAGAATTCATGTGCTTCACATTGGCATCATATCTGAATGCATTACCATGGATGTCTGTCAGTTTGCCTGTATATGAAAACAACATAAAAACCACTTAAGCATATTTATGTTAAATATCAAGTACATTTGTAAAAGTGAACATGCAACCAATGACTATCACCTCCAACTGCATGCAGAATTGCCTCAGGTGCACAAGTGTCCCACTTTTTACATCCTGGACTGGCAAACACATAAGCGGAGGCCTTTCCCTCCACTAGCTGGATGATCTACCAGGCCCAGAATGAAGACTGATTAGTTCAATTTCAATGCCAATATTGACTCGAAATCAAGGCTAGTGTCCCACCTTATTCCCAGCTCCTCCCACTCTGATGACATCATGAGGCTCCATAGCTTGTACTGTGTCGGTCACAAGTTTATTGCTATGGGAACGTGTGGTTGTGATGATTCTTTTACCATCTGGGACTTCCTGGAGTTGAAACCCAAATGCGCCCAAACCCAGAACTCCCCATAATGTTCTGCCCAAAGAAGCACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250559 True 3149 lncRNA 0.35 2 5741058 5744465

Neighbor

gene id symbol gene type direction distance location
CI01000051_05712567_05728993 YLPM1 coding upstream 11367 5712567 ~ 5729691 (+)
CI01000051_05657394_05672861 SYT14B, SYT14 coding upstream 66856 5657394 ~ 5674202 (+)
CI01000051_05588671_05593438 RDH14B coding upstream 147081 5588292 ~ 5593977 (+)
CI01000051_05579061_05584087 CRIP2 coding upstream 156971 5579061 ~ 5584087 (+)
CI01000051_05523573_05525861 NA coding upstream 214051 5523362 ~ 5527007 (+)
CI01000051_05757566_05757955 C12ORF57 coding downstream 13101 5757566 ~ 5758141 (+)
CI01000051_05831209_05933202 DLGAP2 coding downstream 86744 5831209 ~ 5933637 (+)
CI01000051_05935542_05939529 NA coding downstream 190978 5935443 ~ 5939632 (+)
CI01000051_05955881_05966250 NA coding downstream 210952 5955417 ~ 5966425 (+)
CI01000051_05969849_05970699 NA coding downstream 225384 5969849 ~ 5971469 (+)
G220930 NA non-coding upstream 887 5739579 ~ 5740171 (+)
G220922 NA non-coding upstream 64095 5676464 ~ 5676963 (+)
G220889 NA non-coding upstream 169321 5571458 ~ 5571737 (+)
G220861 NA non-coding upstream 218272 5521857 ~ 5522786 (+)
G220856 NA non-coding upstream 242399 5498104 ~ 5498659 (+)
G220923 NA non-coding downstream 45063 5789528 ~ 5830106 (+)
G220920 NA non-coding downstream 201125 5945590 ~ 5946344 (+)
G220983 NA non-coding downstream 245341 5989806 ~ 5990114 (+)
G220967 NA non-coding downstream 270708 6015173 ~ 6016182 (+)
G220991 NA non-coding downstream 274856 6019321 ~ 6019978 (+)
G219803 NA other upstream 689025 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 1365728 4372658 ~ 4393677 (+)
G218981 NA other upstream 2494185 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 3674975 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 5016354 637590 ~ 720669 (+)
CI01000051_06825895_06830637 NA other downstream 1081334 6825895 ~ 6830637 (+)
G221319 NA other downstream 1597576 7342041 ~ 7342546 (+)
G221386 NA other downstream 1665058 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 2361178 8209722 ~ 8214696 (+)
G222727 NA other downstream 2598477 8342942 ~ 8343448 (+)

Expression


Co-expression Network