XLOC_009733


Basic Information

Item Value
gene id XLOC_009733
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11361760 ~ 11376845 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021686
agagagagagagcagatgaGAAAGGGAGGGGGTTTGGAGTCAGAGTGAATGCAGCTTGCACTGCTGTGCTTTGGAATTACAGCTATGAACATTGTCAGGGACTTGAAAAAGAAAGGAAAGCAAAGGAGAAAAGGACAGAGGAAGCAAGAGAAAGATTGCAGAGCTTCTTGATGCGCGACGCAGAAGAAGACTGAAGGTAAAGAGGAGGCGCACCGGAGGAGCTTCACACCAATCCTCTCATCTTCAGTTCCTCAGCAGATCGGCCTGTTGTCCCTCATCACTGGGGTCGTCATTGGAACTGCGTCTCACCGTCTTAAAGCAAGACCGAGATACTCTGATGAGGAAATTCTCAGCGCGGCGACAGATGTGACGCCCCTCCTTTTCCCAATATCAGCTTCCACGGCCCCTGGAGCAGCCATAACCCGACCCGCCTCCATCCTAGACGTGCCGTTGTAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097447 dendritic tree cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0098794 postsynapse cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021686 True 456 lncRNA 0.52 2 11361760 11376845

Neighbor

gene id symbol gene type direction distance location
XLOC_009732 znf574 coding upstream 17033 11297703 ~ 11344727 (+)
XLOC_009731 gsk3ab coding upstream 69612 11242443 ~ 11292148 (+)
XLOC_009730 cicb coding upstream 137316 11151699 ~ 11224444 (+)
XLOC_009729 erfl3 coding upstream 218963 11029762 ~ 11142797 (+)
XLOC_009728 pou2f2a coding upstream 370520 10918252 ~ 10991240 (+)
XLOC_009734 grik5 coding downstream 106966 11483811 ~ 11555934 (+)
XLOC_009735 zgc:198329 coding downstream 182023 11558868 ~ 11569729 (+)
XLOC_009736 NA coding downstream 196344 11573189 ~ 11578407 (+)
XLOC_009737 NA coding downstream 203807 11580652 ~ 11583878 (+)
XLOC_009738 si:dkey-11o1.6 coding downstream 208731 11585576 ~ 11593545 (+)
XLOC_009724 NA non-coding upstream 744074 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 971973 10387719 ~ 10389787 (+)
XLOC_009718 NA non-coding upstream 981939 10378331 ~ 10379821 (+)
XLOC_009715 FP016064.1 non-coding upstream 1037095 10324549 ~ 10324665 (+)
XLOC_009712 NA non-coding upstream 1345047 10012335 ~ 10016713 (+)
XLOC_009751 NA non-coding downstream 740786 12117631 ~ 12139336 (+)
XLOC_009755 CR388102.1 non-coding downstream 923324 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 non-coding downstream 1003885 12380730 ~ 12380846 (+)

Expression


Co-expression Network