XLOC_009734 (grik5)


Basic Information

Item Value
gene id XLOC_009734
gene name grik5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11483811 ~ 11555934 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019487
GGGGTGCTATAGGCAGCAGAAGGCATCTCCATGAGGAGCGGTAGAAGATGCCGGAACTGCCAGCGCTCCTGCTGTCGATTTACTTCCGCTTCCTGTTAGTCACTGTGGTTACCATGCCGCCTTCTTCCCTGAGCCAGACCCCTGTTCTGTCATCCGTACGGATGGCTGCTATTTTGGATGACAGCTCTGTCTGTGGCCGTGGGGAGCGGTTAGCTTTAGCATTAGCACGTGAGAATATCAACAGTGTGATGGAGAACCCAGCTCGTGCTCGCGTGGAGGTCGACATATTTGAACTTCAGAAAGACTCACAGTATGAGACTACAGATACGATGTGCCAGATTCTACCAAAGGGCGTGGTCTCTGTTATCGGCCCCGCCTCCAGTCCCGCTTCCGGCTCTATAGTCAGTCACATATGTGGGGAAAAAGAGATTCCCCACGTCAAAATCGGTCCAGAAGAGACTCCGCGGCTTCCTTACCTGCGCTTTGCGTCTGTGACTCTGTATCCTAGCAACGAGGATTTGAGCCTTGCCATCGGCTCCATCCTACGCTCCTTTAGCTACCCATCGGCTAGTCTGGTCTGCGCTAAGGCCGAATGTCTGCTGAGACTGGAAGAGCTGATAAGGCGTTTTCTGATCTCTCGAGAGACGCTGTCAATCAGGATGCTGGATGACAACCTTGACCCAACGCCATTACTGAAGGAGATTCGTGATGACAAAATAGCTACAATAATTATTGATGCTAATGCGTCCATTTCTTACCTTATACTGAAAAAGGCATCAGAGTTGGGGATGACATCAGCGTTTTACAAGTACATCCTCACAACTATGGACTTCCCATTGCTTTGGTTGGATGATATAGTGGATGAGCAGTCAAACATCGTGGGCTTCTCAATGTTTAACACCACCCACCCCTTTTACCTGGAGTTTATCAGAAGCCTTAACCTGTCCTGGAGAGAGGGCTGTGACATTAACCCGTATCCCGGACCAGCAcTGTCGTCGGCCCTGCTGTTTGATGCGGTCCATGTGGTAGTGAGTGCAGTGCAGGAACTCAACCGGAGTCAGGAGATTGGCGTCAAACCTCTCAGCTGCACCTCCCCTCAGATCTGGCAACATGGAACCAGCCTCATGAACTACCTGCGCATgGTGGAGTATGACGGCTTGACAGGACGAGTTGAGTTCAACAGTAAAGGCCAGAGGACCAATTACACCCTCCACATTCTGGAGAAGCACAGGGGAGGCCACAAAGAGATTGGGATCTGGTACTCTAATAACACTCTCCTGATGAACTCCACCAGCCTGGACATCAATGTCTCTGAGACTCTGGCTAACAAGAGCCTCATCATCACCACCATACTTgagAACCCATACGTAATGAGAAAGATTAATTACCAGGAGTTTGAGGGGAACGAGCAGTATGAGGGTTTTTGTGTGGACATGTTAAGAGAGCTATCTGACATCCTCAAGTTCACCTACCGCATCAAACTGGTGGACGATGGTCTGTACGGGGCACCCGAACCCAACGGCTCGTGGACGGGCATGGTGGGAGAGCTGATCAATAGGAAAGCTGATTTGGCCGTAGCTGCTTTTACCATCACATCTGAGAGAGAGAAGGTCATCGACTTCTCCAAACCTTTCATGACCCTGGGCATCAGTATTCTCTACAGGGTCCATATAgGCAGGAAGCCAGGTTATTTCTCCTTCCTGGATCCTTTCTCACCGGCTGTTTGGCTCTTCATGCTGCTGGCTTACCTCGCTGTCAGCTGTGTGCTTTTTCTTTCTgcgagGTTAAGCCCTTATGAATGGTACAACCCTCATCCGTGTCTGCGAGAGCGCAGAGACCTGCTGGAGAATCAGTACACACTAGGAAACAGCCTGTGGTTTCCTGTGGGGGGCTTCATGCAGCAGGGCTCTGAGATCATGCCCAGAGCCCTGTCCACGCGCTGCGTCAGCGGGGTCTGGTGGGCATTCACTCTCATAATAATCTCCTCATACACTGCGAATCTTGCTGCGTTTCTGACCGTGCAGAGAATGGAAGTGCCAATCGAATCACCAGATGACCTCGCCGATCAAACCAATATCCAATATGGCACCATTCATGGAGGAAGCACCATGACCTTTTTTAtgaactcCCGGTATCAAACGTATCAGCGCATGTGGAACTACATGTATTCAAAGCAGCCCAGTGTCTTCGTTAAGAGCACAGAGGAGGGCATCGCACGAGTCGTGAACTCCAAATATGCCTTTCTCCTGGAGAGCACCATGAATGAGTACCACCGCAGCCTCAACTGCAACCTCACCCAAATCGGAGGACTGCTGGACACCAAGGGTTACGGCATTGGCATGCCTCTGGGTTCTCCTTTCAGAGATGAGCTCAGTCTGGCAGTGCTGCAGTTGCAGGAGAATAACAGGTTGGAGATCCTGAAGAGAAGATGGTGGGAGGGAGGAAAGTGTCCCAAAGAGGAAGACCACCGAGCCAAAGGTCTTGGGATGGAGAACATTGGCGGTATATTTGTGGTGTTGATCTGTGGCCTGATTATTGCTGTGTTTGTGGCTGTGATGGAGTTTGTGTGGTCCACGCGTCGATCAGCAGAAACAGACGAGGTGTCCGTATGTCAGGAGATGTTGACAGAATTTCGTAACGCCGTCTCCTGCAAGAAAAGCTCTCGTCTACGCCGCCGCCGGCCTCTGTCCAGCTCTCTGGCCCTCCGGCATCCCACCCGCATCACTTTGGGGGCTCCACGACCCCTGCGCCTTGTGAGAGAGATGCGCCTTAGCAACGGAAAGCTCTACAGTGGCACTGGACCCCTCACAGGAGGTTCAGGGCCTGGAGGAGGCCCCACAGACATGGGTCCTGGCCCCCAACGGCTCCTGGAGGATCCATTAGGAGCCAACAGCACGCCTGCAGTGGCCCTGGGACCCCCCGCAGTGACAGTGCCTCTGCCGCGGGGTTGCACTCACGTGCGCATCTGCCAGGAGTGCAGGCGGATTCAGAGTCTCCGCACAACTTCATGCACACGAATCCCTCCCTCCTCCGCCCCCCTGCCCCGCCTCGCTCCACCCCCTCCACACTCATCCTCGAATACAGACAGCGAAGGGGGCGGCGGCCTAAGCCCGTGCCGAATAGGACACTCCCCTCCGGCTAAAGGCTGCTCTTTACCACCACCTCAGTCTAGCAACAACACAGACCTAATGGGGGAGCAAAAATGAGAACAGACAAACTAACAAACACAAGTATGACACATTTTTGCAATATTCGCCTCCATGTTcgaaatcacagacaaatgcgCTTTCCATCTTTTCCTTGGTACAAAAAATGGATCCTTTTCTTTTGGATAGCCATGTGTCATTTCAATGATTCTTTTGTACTACTGAATGATGTACTATAACACTGACTGTGTAAGAAATGATTGTACGCCTCAGACACAAGGGTGCAGATGTTAAATGTGATTCTGATCAGGCAGCACACAGACGTCTGACAGATTCTCCTTCCCTTTCCTGACTGAAATCTCTCTCTGTTTGGATAGAGGTCACACACTGGAAGTAGCACAGCGGAGACGCTCTCGTTTGGACGTCCAGATCAGAGCTCGAATGCCACAGAATGAGAGCACACAACATTCGTGGAGGACAATGATGCAAACttgttaatgaaaaaaaaagatattctaaAAACAGATATTCTTACTTTTCTGTactatacttatttttaaattcacTGTCTGTGTAATTTAATTCTGGGGTTGTGTTGTCTGAATTGGAAATTAAAAATAGAGATACTTTATTGATACTGAGGAGATCAACTCTGACTGAATATGTATGGGTTTTTTTGGGAAACGAGGAGCTGTGTTCATTAAAACGTGGACTTTGATCTGTCTGCTAGAAC
>TCONS_00019486
GGGGTGCTATAGGCAGCAGAAGGCATCTCCATGAGGAGCGGTAGAAGATGCCGGAACTGCCAGCGCTCCTGCTGTCGATTTACTTCCGCTTCCTGTTAGTCACTGTGGTTACCATGCCGCCTTCTTCCCTGAGCCAGACCCCTGTTCTGTCATCCGTACGGATGGCTGCTATTTTGGATGACAGCTCTGTCTGTGGCCGTGGGGAGCGGTTAGCTTTAGCATTAGCACGTGAGAATATCAACAGTGTGATGGAGAACCCAGCTCGTGCTCGCGTGGAGGTCGACATATTTGAACTTCAGAAAGACTCACAGTATGAGACTACAGATACGATGTGCCAGATTCTACCAAAGGGCGTGGTCTCTGTTATCGGCCCCGCCTCCAGTCCCGCTTCCGGCTCTATAGTCAGTCACATATGTGGGGAAAAAGAGATTCCCCACGTCAAAATCGGTCCAGAAGAGACTCCGCGGCTTCCTTACCTGCGCTTTGCGTCTGTGACTCTGTATCCTAGCAACGAGGATTTGAGCCTTGCCATCGGCTCCATCCTACGCTCCTTTAGCTACCCATCGGCTAGTCTGGTCTGCGCTAAGGCCGAATGTCTGCTGAGACTGGAAGAGCTGATAAGGCGTTTTCTGATCTCTCGAGAGACGCTGTCAATCAGGATGCTGGATGACAACCTTGACCCAACGCCATTACTGAAGGAGATTCGTGATGACAAAATAGCTACAATAATTATTGATGCTAATGCGTCCATTTCTTACCTTATACTGAAAAAGGCATCAGAGTTGGGGATGACATCAGCGTTTTACAAGTACATCCTCACAACTATGGACTTCCCATTGCTTTGGTTGGATGATATAGTGGATGAGCAGTCAAACATCGTGGGCTTCTCAATGTTTAACACCACCCACCCCTTTTACCTGGAGTTTATCAGAAGCCTTAACCTGTCCTGGAGAGAGGGCTGTGACATTAACCCGTATCCCGGACCAGCAcTGTCGTCGGCCCTGCTGTTTGATGCGGTCCATGTGGTAGTGAGTGCAGTGCAGGAACTCAACCGGAGTCAGGAGATTGGCGTCAAACCTCTCAGCTGCACCTCCCCTCAGATCTGGCAACATGGAACCAGCCTCATGAACTACCTGCGCATgGTGGAGTATGACGGCTTGACAGGACGAGTTGAGTTCAACAGTAAAGGCCAGAGGACCAATTACACCCTCCACATTCTGGAGAAGCACAGGGGAGGCCACAAAGAGATTGGGATCTGGTACTCTAATAACACTCTCCTGATGAACTCCACCAGCCTGGACATCAATGTCTCTGAGACTCTGGCTAACAAGAGCCTCATCATCACCACCATACTTgagAACCCATACGTAATGAGAAAGATTAATTACCAGGAGTTTGAGGGGAACGAGCAGTATGAGGGTTTTTGTGTGGACATGTTAAGAGAGCTATCTGACATCCTCAAGTTCACCTACCGCATCAAACTGGTGGACGATGGTCTGTACGGGGCACCCGAACCCAACGGCTCGTGGACGGGCATGGTGGGAGAGCTGATCAATAGGAAAGCTGATTTGGCCGTAGCTGCTTTTACCATCACATCTGAGAGAGAGAAGGTCATCGACTTCTCCAAACCTTTCATGACCCTGGGCATCAGTATTCTCTACAGGGTCCATATAgGCAGGAAGCCAGGTTATTTCTCCTTCCTGGATCCTTTCTCACCGGCTGTTTGGCTCTTCATGCTGCTGGCTTACCTCGCTGTCAGCTGTGTGCTTTTTCTTTCTgcgagGTTAAGCCCTTATGAATGGTACAACCCTCATCCGTGTCTGCGAGAGCGCAGAGACCTGCTGGAGAATCAGTACACACTAGGAAACAGCCTGTGGTTTCCTGTGGGGGGCTTCATGCAGCAGGGCTCTGAGATCATGCCCAGAGCCCTGTCCACGCGCTGCGTCAGCGGGGTCTGGTGGGCATTCACTCTCATAATAATCTCCTCATACACTGCGAATCTTGCTGCGTTTCTGACCGTGCAGAGAATGGAAGTGCCAATCGAATCACCAGATGACCTCGCCGATCAAACCAATATCCAATATGGCACCATTCATGGAGGAAGCACCATGACCTTTTTTAtgaactcCCGGTATCAAACGTATCAGCGCATGTGGAACTACATGTATTCAAAGCAGCCCAGTGTCTTCGTTAAGAGCACAGAGGAGGGCATCGCACGAGTCGTGAACTCCAAATATGCCTTTCTCCTGGAGAGCACCATGAATGAGTACCACCGCAGCCTCAACTGCAACCTCACCCAAATCGGAGGACTGCTGGACACCAAGGGTTACGGCATTGGCATGCCTCTGGGTTCTCCTTTCAGAGATGAGCTCAGTCTGGCAGTGCTGCAGTTGCAGGAGAATAACAGGTTGGAGATCCTGAAGAGAAGATGGTGGGAGGGAGGAAAGTGTCCCAAAGAGGAAGACCACCGAGCCAAAGGTCTTGGGATGGAGAACATTGGCGGTATATTTGTGGTGTTGATCTGTGGCCTGATTATTGCTGTGTTTGTGGCTGTGATGGAGTTTGTGTGGTCCACGCGTCGATCAGCAGAAACAGACGAGGTACGGCCTCTCTCCTGCGACCGCCAATATCACAGTCACACTACAGTGTCCGTATGTCAGGAGATGTTGACAGAATTTCGTAACGCCGTCTCCTGCAAGAAAAGCTCTCGTCTACGCCGCCGCCGGCCTCTGTCCAGCTCTCTGGCCCTCCGGCATCCCACCCGCATCACTTTGGGGGCTCCACGACCCCTGCGCCTTGTGAGAGAGATGCGCCTTAGCAACGGAAAGCTCTACAGTGGCACTGGACCCCTCACAGGAGGTTCAGGGCCTGGAGGAGGCCCCACAGACATGGGTCCTGGCCCCCAACGGCTCCTGGAGGATCCATTAGGAGCCAACAGCACGCCTGCAGTGGCCCTGGGACCCCCCGCAGTGACAGTGCCTCTGCCGCGGGGTTGCACTCACGTGCGCATCTGCCAGGAGTGCAGGCGGATTCAGAGTCTCCGCACAACTTCATGCACACGAATCCCTCCCTCCTCCGCCCCCCTGCCCCGCCTCGCTCCACCCCCTCCACACTCATCCTCGAATACAGACAGCGAAGGGGGCGGCGGCCTAAGCCCGTGCCGAATAGGACACTCCCCTCCGGCTAAAGGCTGCTCTTTACCACCACCTCAGTCTAGCAACAACACAGACCTAATGGGGGAGCAAAAATGAGAACAGACAAACTAACAAACACAAGTATGACACATTTTTGCAATATTCGCCTCCATGTTcgaaatcacagacaaatgcgCTTTCCATCTTTTCCTTGGTACAAAAAATGGATCCTTTTCTTTTGGATAGCCATGTGTCATTTCAATGATTCTTTTGTACTACTGAATGATGTACTATAACACTGACTGTGTAAGAAATGATTGTACGCCTCAGACACAAGGGTGCAGATGTTAAATGTGATTCTGATCAGGCAGCACACAGACGTCTGACAGATTCTCCTTCCCTTTCCTGACTGAAATCTCTCTCTGTTTGGATAGAGGTCACACACTGGAAGTAGCACAGCGGAGACGCTCTCGTTTGGACGTCCAGATCAGAGCTCGAATGCCACAGAATGAGAGCACACAACATTCGTGGAGGACAATGATGCAAACttgttaatgaaaaaaaaagatattctaaAAACAGATATTCTTACTTTTCTGTactatacttatttttaaattcacTGTCTGTGTAATTTAATTCTGGGGTTGTGTTGTCTGAATTGGAAATTAAAAATAGAGATACTTTATTGATACTGAGGAGATCAACTCTGACTGAATATGTATGGGTTTTTTTGGGAAACGAGGAGCTGTGTTCATTAAAACGTGGACTTTGATCTGTCTGCTAGAAC

Function

symbol description
grik5 Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Is expressed in brain; eye; retinal inner plexiform layer; retinal outer plexiform layer; and retinal photoreceptor layer. Orthologous to human GRIK5 (glutamate ionotropic receptor kainate type subunit 5).

GO:

id name namespace
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-070821-6 Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Is expressed in brain; eye; retinal inner plexiform layer; retinal outer plexiform layer; and retinal photoreceptor layer. Orthologous to human GRIK5 (glutamate ionotropic receptor kainate type subunit 5).

Ensembl:

ensembl_id ENSDARG00000101449

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019487 False 3879 mRNA 0.51 19 11483811 11555934
TCONS_00019486 True 3924 mRNA 0.51 19 11483811 11555934

Neighbor

gene id symbol gene type direction distance location
XLOC_009733 NA coding upstream 106966 11361760 ~ 11376845 (+)
XLOC_009732 znf574 coding upstream 139084 11297703 ~ 11344727 (+)
XLOC_009731 gsk3ab coding upstream 191663 11242443 ~ 11292148 (+)
XLOC_009730 cicb coding upstream 259367 11151699 ~ 11224444 (+)
XLOC_009729 erfl3 coding upstream 341014 11029762 ~ 11142797 (+)
XLOC_009735 zgc:198329 coding downstream 2934 11558868 ~ 11569729 (+)
XLOC_009736 NA coding downstream 17255 11573189 ~ 11578407 (+)
XLOC_009737 NA coding downstream 24718 11580652 ~ 11583878 (+)
XLOC_009738 si:dkey-11o1.6 coding downstream 29642 11585576 ~ 11593545 (+)
XLOC_009739 si:dkey-11o1.7 coding downstream 41452 11597386 ~ 11598447 (+)
XLOC_009724 NA non-coding upstream 866125 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 1094024 10387719 ~ 10389787 (+)
XLOC_009718 NA non-coding upstream 1103990 10378331 ~ 10379821 (+)
XLOC_009715 FP016064.1 non-coding upstream 1159146 10324549 ~ 10324665 (+)
XLOC_009751 NA non-coding downstream 561697 12117631 ~ 12139336 (+)
XLOC_009755 CR388102.1 non-coding downstream 744235 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 non-coding downstream 824796 12380730 ~ 12380846 (+)

Expression


Co-expression Network