Item | Value |
---|---|
gene id | G220967 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000051 |
NCBI id | null |
chromosome length | 8436717 |
location | 6015173 ~ 6016182 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
description |
---|
cancer-related nucleoside-triphosphatase |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU250633 | True | 1010 | lncRNA | 0.40 | 1 | 6015173 | 6016182 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000051_05996289_06007664 | RHAG | coding | upstream | 6615 | 5995995 ~ 6008558 (+) |
CI01000051_05969849_05970699 | NA | coding | upstream | 43704 | 5969849 ~ 5971469 (+) |
CI01000051_05955881_05966250 | NA | coding | upstream | 48748 | 5955417 ~ 5966425 (+) |
CI01000051_05935542_05939529 | NA | coding | upstream | 75541 | 5935443 ~ 5939632 (+) |
CI01000051_05831209_05933202 | DLGAP2 | coding | upstream | 81536 | 5831209 ~ 5933637 (+) |
CI01000051_06113450_06128623 | TAGAPB | coding | downstream | 97268 | 6113450 ~ 6129084 (+) |
CI01000051_06136031_06140543 | RSPH3 | coding | downstream | 119849 | 6136031 ~ 6140633 (+) |
CI01000051_06155906_06164505 | EZRB, RDX, EZR | coding | downstream | 139724 | 6155906 ~ 6164505 (+) |
CI01000051_06167413_06171890 | NA | coding | downstream | 151021 | 6167203 ~ 6172507 (+) |
CI01000051_06286985_06304439 | KCNK3A, KCNK3 | coding | downstream | 270803 | 6286985 ~ 6304439 (+) |
G220983 | NA | non-coding | upstream | 25059 | 5989806 ~ 5990114 (+) |
G220920 | NA | non-coding | upstream | 68829 | 5945590 ~ 5946344 (+) |
G220923 | NA | non-coding | upstream | 185067 | 5789528 ~ 5830106 (+) |
G220916 | NA | non-coding | upstream | 270708 | 5741058 ~ 5744465 (+) |
G220930 | NA | non-coding | upstream | 275002 | 5739579 ~ 5740171 (+) |
G220991 | NA | non-coding | downstream | 3139 | 6019321 ~ 6019978 (+) |
G220993 | NA | non-coding | downstream | 4721 | 6020903 ~ 6021164 (+) |
G220992 | NA | non-coding | downstream | 6765 | 6022947 ~ 6023186 (+) |
G220995 | NA | non-coding | downstream | 7717 | 6023899 ~ 6024130 (+) |
G220996 | NA | non-coding | downstream | 9551 | 6025733 ~ 6025954 (+) |
G219803 | NA | other | upstream | 963140 | 4914974 ~ 5052033 (+) |
CI01000051_04374052_04393328 | NA | other | upstream | 1639843 | 4372658 ~ 4393677 (+) |
G218981 | NA | other | upstream | 2768300 | 3245443 ~ 3246873 (+) |
CI01000051_02060996_02061735 | NA | other | upstream | 3949090 | 2060534 ~ 2062355 (+) |
CI01000051_00638200_00720543 | CDC42BPB | other | upstream | 5290469 | 637590 ~ 720669 (+) |
CI01000051_06825895_06830637 | NA | other | downstream | 809617 | 6825895 ~ 6830637 (+) |
G221319 | NA | other | downstream | 1325859 | 7342041 ~ 7342546 (+) |
G221386 | NA | other | downstream | 1393341 | 7401175 ~ 7413007 (+) |
CI01000051_08211233_08214513 | NA | other | downstream | 2089461 | 8209722 ~ 8214696 (+) |
G222727 | NA | other | downstream | 2326760 | 8342942 ~ 8343448 (+) |