Gene
RNA
| Item | Value |
|---|---|
| gene id | G220991 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 6019321 ~ 6019978 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU250659 | False | 437 | lncRNA | 0.54 | 1 | 6019321 | 6019757 |
| TU250657 | False | 322 | lncRNA | 0.57 | 1 | 6019436 | 6019757 |
| TU250661 | True | 543 | lncRNA | 0.45 | 1 | 6019436 | 6019978 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000051_05996289_06007664 | RHAG | coding | upstream | 10763 | 5995995 ~ 6008558 (+) |
| CI01000051_05969849_05970699 | NA | coding | upstream | 47852 | 5969849 ~ 5971469 (+) |
| CI01000051_05955881_05966250 | NA | coding | upstream | 52896 | 5955417 ~ 5966425 (+) |
| CI01000051_05935542_05939529 | NA | coding | upstream | 79689 | 5935443 ~ 5939632 (+) |
| CI01000051_05831209_05933202 | DLGAP2 | coding | upstream | 85684 | 5831209 ~ 5933637 (+) |
| CI01000051_06113450_06128623 | TAGAPB | coding | downstream | 93472 | 6113450 ~ 6129084 (+) |
| CI01000051_06136031_06140543 | RSPH3 | coding | downstream | 116053 | 6136031 ~ 6140633 (+) |
| CI01000051_06155906_06164505 | EZRB, RDX, EZR | coding | downstream | 135928 | 6155906 ~ 6164505 (+) |
| CI01000051_06167413_06171890 | NA | coding | downstream | 147225 | 6167203 ~ 6172507 (+) |
| CI01000051_06286985_06304439 | KCNK3A, KCNK3 | coding | downstream | 267007 | 6286985 ~ 6304439 (+) |
| G220967 | NA | non-coding | upstream | 3139 | 6015173 ~ 6016182 (+) |
| G220983 | NA | non-coding | upstream | 29207 | 5989806 ~ 5990114 (+) |
| G220920 | NA | non-coding | upstream | 72977 | 5945590 ~ 5946344 (+) |
| G220923 | NA | non-coding | upstream | 189215 | 5789528 ~ 5830106 (+) |
| G220916 | NA | non-coding | upstream | 274856 | 5741058 ~ 5744465 (+) |
| G220993 | NA | non-coding | downstream | 925 | 6020903 ~ 6021164 (+) |
| G220992 | NA | non-coding | downstream | 2969 | 6022947 ~ 6023186 (+) |
| G220995 | NA | non-coding | downstream | 3921 | 6023899 ~ 6024130 (+) |
| G220996 | NA | non-coding | downstream | 5755 | 6025733 ~ 6025954 (+) |
| G220998 | NA | non-coding | downstream | 6637 | 6026615 ~ 6026902 (+) |
| G219803 | NA | other | upstream | 967288 | 4914974 ~ 5052033 (+) |
| CI01000051_04374052_04393328 | NA | other | upstream | 1643991 | 4372658 ~ 4393677 (+) |
| G218981 | NA | other | upstream | 2772448 | 3245443 ~ 3246873 (+) |
| CI01000051_02060996_02061735 | NA | other | upstream | 3953238 | 2060534 ~ 2062355 (+) |
| CI01000051_00638200_00720543 | CDC42BPB | other | upstream | 5294617 | 637590 ~ 720669 (+) |
| CI01000051_06825895_06830637 | NA | other | downstream | 805821 | 6825895 ~ 6830637 (+) |
| G221319 | NA | other | downstream | 1322063 | 7342041 ~ 7342546 (+) |
| G221386 | NA | other | downstream | 1389545 | 7401175 ~ 7413007 (+) |
| CI01000051_08211233_08214513 | NA | other | downstream | 2085665 | 8209722 ~ 8214696 (+) |
| G222727 | NA | other | downstream | 2322964 | 8342942 ~ 8343448 (+) |
