XLOC_009735 (zgc:198329)


Basic Information

Item Value
gene id XLOC_009735
gene name zgc:198329
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11558868 ~ 11569729 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019488
GTTCAGGTGGCTTGAGCTGACAGATGAGAGATCGATCATGATGGTTTCGCATGGTTTATTCTGGACACTGTGGATGGTGGCCTGTTTTGAACAATGTTTGGGCCAAGATCTTCAGTTTCCTGAGCTGAATAATGGAGCAGTAGGAGGAAGTGTAAAGTTCACCCCTAATAATCCACCATCAACAGCGATCAACCAATTTACCTGGCAGTTTGAAACAATTCTTATATTGACTGGAAAGCCTGATTCACCCACAGTATCCTCAGAATATCAAGACAGAGTCTTTTTGGacaaaaacacactcgctctggaaCTCTGGAATCTGACTTTCAGGGATTCAGGATCATACAATCTGTCTGTGAATACTGTTAATGGCGATGAAATTAGAGAACAAACTTCACTACAGGTGTATGAAATAATATCTGATGTGACACTTACTGGTCCACAAGAAACATTAATTGAGGATGAATCATCTGCTAACATCACCTCTAAGGGAAGTGGCAACATCACCTCTGTGCAGTGGATGAAGGATAACAGTCCTCTGTCTTCTAGCAGCAGAATCATCTTCTCATCTGATAACAGATCAGTGTACATTAGTCCAGTGGAGAGATCAGACACTGGAGAATTACAGTGTACATACAGTAACCCTGTCAGCTCTGAGACAGCAAAACACACCCTGATCATCAATTATGGACCAGATGGTGTTTCTATTGAGGGTCCAAATGTGGTGGATTTAGGGGTTCAAATATTTCTATCTTGCTCTGCAAATTCTGAACCTTCTGCTTCGTTCAGCTGGACGTTTAATGGGTCAGACACTGGTGTGACTACAGACAAATACACCATTGATAAGACTGACTTCAACAACAGTGGAGAATACATCTGTACAGCCTTTAATAGAGTCACAAACAGAAGAGAATTGAAAACACATGCTTTACTAGTTCAAGCTGGAGGTGGAGGACTATCAGGAGGAGCAATAGCAGGGATTGTCATTGGGGTTTTAGTTGCAGTTTCAGGCATTTGTGGCCTGATTGTCTATTTAACAAAAACCAACAAAATCCCAAAGCTAAAGAGTGAAGCACAAAGAAGTGAAGCACCAGCAAAAAGCAAAGAGAAAACCGACTTAACCTATGTAAACATCCCTGGTCACCAGATGACTAGAGGAGGTGAAACGGCTCAGGGGAAGGGCGGTGATTCTgcaatatatatgaatatgaaaacAGATCCAAATAGTAAAGAAGATgagtatgtaaatgtaaaacatggaGTTCCAAGCAGTCAAAGGTGAAAAAATGAAGATACTCTACCGAAATACTACATCTGCTACAAGATGGACagagtgtgtactgtatgtgttcaaGGTGGCAACCTGTATATATGTCATGTTACCAAAATACCTTTTGATTTTAACTTGTGTTTCACACTGGAAAATGAGATCAAGGCCACAAATAtttctcataaaaaaaaaaagaattctaaGCCATCAGCCATATGCAGCCATGCTAAGATTCAAAACCTCTCGTTGACttgaaaaacattacaaactaAATAAGAGCAAGTCCTAATACAATAGAAGGTTGTACTTGCAGGTGATATACAATAAAATAGAAAGGACATGACATACTTTTTACATACTCCTACAGTAAATGCttcttatttaatgtttatttacagtttttgaaTTACTTGGTGTAATTTCCTATAATACACTGTTAGCTACTACTGCTTCAATCAAACAGTTTCTCTGAAATGATCAGCCATATCTTCACCGTGCTTGCACTGGCCAATACATACATAACGCAATGAGCTTATACTTAAATCACTTTTAGACCTGACTACAATGTCACCTAGAGATAATAAAGAAGGAAGTAGTTATGCTTTATCATAAACAGCGtgttgtgataataatatttatatacttatataaaaGTTGTATTATCTGAACATCAAAGTAGATTGTTTATCATCTTTCCAGTTAATATGATATAACTACTgtcatgttgtttaaaaaaaaaaaaa
>TCONS_00019489
ATGATGGTTTCGCATGGTTTATTCTGGACACTGTGGATGGTGGCCTGTTTTGAACAATGTTTGGGCCAAGATCTTCAGTTTCCTGAGCTGAATAATGGAGCAGTAGGAGGAAGTGTAAAGTTCACCCCTAATAATCCACCATCAACAGCGATCAACCAATTTACCTGGCAGTTTGAAACAATTCTTATATTGACTGGAAAGCCTGATTCACCCACAGTATCCTCAGAATATCAAGACAGAGTCTTTTTGGacaaaaacacactcgctctggaaCTCTGGAATCTGACTTTCAGGGATTCAGGATCATACAATCTGTCTGTGAATACTGTTAATGGCGATGAAATTAGAGAACAAACTTCACTACAGGTGTATGAAATAATATCTGATGTGACACTTACTGGTCCACAAGAAACATTAATTGAGGATGAATCATCTGCTAACATCACCTCTAAGGGAAGTGGCAACATCACCTCTGTGCAGTGGATGAAGGATAACAGTCCTCTGTCTTCTAGCAGCAGAATCATCTTCTCATCTGATAACAGATCAGTGTACATTAGTCCAGTGGAGAGATCAGACACTGGAGAATTACAGTGTACATACAGTAACCCTGTCAGCTCTGAGACAGCAAAACACACCCTGATCATCAATTATGGACCAGATGGTGTTTCTATTGAGGGTCCAAATGTGGTGGATTTAGGGGTTCAAATATTTCTATCTTGCTCTGCAAATTCTGAACCTTCTGCTTCGTTCAGCTGGACGTTTAATGGGTCAGACACTGGTGTGACTACAGACAAATACACCATTGATAAGACTGACTTCAACAACAGTGGAGAATACATCTGTACAGCCTTTAATAGAGTCACAAACAGAAGAGAATTGAAAACACATGCTTTACTAGTTCAAGCTGGAGGTGGAGGACTATCAGGAGGAGCAATAGCAGGGATTGTCATTGGGGTTTTAGTTGCAGTTTCAGGCATTTGTGGCCTGATTGTCTATTTAACAAAAACCAACAAAATCCCAAAGCTAAAGAGTGAAGCACAAAGAAGTGAAGCACCAGCAAAAAGCAAAGAGAAAACCGACTTAACCTATGTAAACATCCCTGGTCACCAGATGACTAGAGGAGGTGAAACGGCTCAGGGGAAGGGCGGTGATTCTgcaatatatatgaatatgaaaacAGATCCAAATAGTAAAGAAGATgagtatgtaaatgtaaaacatggaGTTCCAAGCAGTCAAAGGTGA

Function

symbol description
zgc:198329 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 4B and autosomal recessive nonsyndromic deafness 113. Orthologous to several human genes including CEACAM6 (CEA cell adhesion molecule 6) and CEACAM8 (CEA cell adhesion molecule 8).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080226-6 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 4B and autosomal recessive nonsyndromic deafness 113. Orthologous to several human genes including CEACAM6 (CEA cell adhesion molecule 6) and CEACAM8 (CEA cell adhesion molecule 8).

Ensembl:

ensembl_id ENSDARG00000076981

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019488 False 2013 mRNA 0.38 9 11558868 11569729
TCONS_00019489 True 1245 mRNA 0.41 8 11558905 11567444

Neighbor

gene id symbol gene type direction distance location
XLOC_009734 grik5 coding upstream 2934 11483811 ~ 11555934 (+)
XLOC_009733 NA coding upstream 182023 11361760 ~ 11376845 (+)
XLOC_009732 znf574 coding upstream 214141 11297703 ~ 11344727 (+)
XLOC_009731 gsk3ab coding upstream 266720 11242443 ~ 11292148 (+)
XLOC_009730 cicb coding upstream 334424 11151699 ~ 11224444 (+)
XLOC_009736 NA coding downstream 3460 11573189 ~ 11578407 (+)
XLOC_009737 NA coding downstream 10923 11580652 ~ 11583878 (+)
XLOC_009738 si:dkey-11o1.6 coding downstream 15847 11585576 ~ 11593545 (+)
XLOC_009739 si:dkey-11o1.7 coding downstream 27657 11597386 ~ 11598447 (+)
XLOC_009740 si:dkey-11o1.3 coding downstream 33367 11603096 ~ 11621551 (+)
XLOC_009724 NA non-coding upstream 941182 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 1169081 10387719 ~ 10389787 (+)
XLOC_009718 NA non-coding upstream 1179047 10378331 ~ 10379821 (+)
XLOC_009715 FP016064.1 non-coding upstream 1234203 10324549 ~ 10324665 (+)
XLOC_009751 NA non-coding downstream 547902 12117631 ~ 12139336 (+)
XLOC_009755 CR388102.1 non-coding downstream 730440 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 non-coding downstream 811001 12380730 ~ 12380846 (+)

Expression


Co-expression Network