XLOC_009737


Basic Information

Item Value
gene id XLOC_009737
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11580652 ~ 11583878 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021687
atgaaaattgttttaaactGTGCTTTTGTGAAACAAAGATATGcagaatattttaattacatatcTTTGCATTTACACTACAGCCCAAAgtttaacagaaaagaaaaaGCACAGGCAAGTGGAGaacCAGAAAAAAGCAAAGAAGAGACTGAACCATACTATGAAGAACTGACTAATGTCCAGAGAACTAATGGAGGGCGAATGGCTCAGGGAAAGAATACAAGCTTCAAAGAAAATgagtatgtaaatgtaaaacatggaCCTCCAAAGAACTCCTGAACTTAAGGTGAAAAAGTGAACACCATGAAAGATTGAAATACTACTGCTGAAGAACAGGATGGATGAActctgtgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcatgtgcatACTTTAAAGAAAAATGTATCATAGTTTTGTgttgaaataataaaacaaacgcATTTTCACATATTGTAAGAAAGTGAATGCAAATGCAGAGCTCATTATTGTAACTCACCTTTGATCAAAATGAGTTTGTCAATgtgataatttacatttttaggaaattaaatatatgagggcaaatttattagcccacctgtgaaatacttattcatttttcaaatatttctcatggGATATTTAAAGTAGCaagcacattttcacagtatttctgataatattttttatagagaaattcttattagatttattttggctaaaaaaaaaaaaagcagttttggggcgacatggtagctcagtggttagcactgttgccttgcagcaagaaggttgctggtttgagtcctggcttggtcagttggaatttctgtgtgggtttcctctgggtgctactgttttccacacagtccaaagacatgcgctgtaggtaaattgaataaactgaattagccataatgaatgtgtgtaaatgagagaatGTATgggttttcccagtactgggttgcagctggaagggcatccgctgtgtaaaacttatgcttgttggcagttcattccactgtgacaacccctgatgattaaaggcactaaatcaaatgaaaataaatgaatgaataaaagcagtttttaaaaatatacatttaaggtcaatattattattagtccTGTTAATCATTCTTTTCcagttggctacagaacaaattatTTTGTATAATGACTTGTCTAACTGCCCTAACTTGCCTAAACTAATTAATCAAGTTAAGGTATTAAACTGCTCTTCAAGCTGCAAACtaatatattgaaaaatatctagtagaatattatgtatgtattatgAATATTATGTCATTATACATCTTTCTGAGAAGTTGCATATTTGAAATCTAAAGACTTTAAATGTGAATTATTTAAAATTC

Function

GO:

id name namespace
GO:0006471 protein ADP-ribosylation biological_process
GO:0099094 ligand-gated cation channel activity molecular_function
GO:0022834 ligand-gated channel activity molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0051765 inositol tetrakisphosphate kinase activity molecular_function
GO:0051766 inositol trisphosphate kinase activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021687 True 1431 lncRNA 0.34 4 11580652 11583878

Neighbor

gene id symbol gene type direction distance location
XLOC_009736 NA coding upstream 2245 11573189 ~ 11578407 (+)
XLOC_009735 zgc:198329 coding upstream 10923 11558868 ~ 11569729 (+)
XLOC_009734 grik5 coding upstream 24718 11483811 ~ 11555934 (+)
XLOC_009733 NA coding upstream 203807 11361760 ~ 11376845 (+)
XLOC_009732 znf574 coding upstream 235925 11297703 ~ 11344727 (+)
XLOC_009738 si:dkey-11o1.6 coding downstream 1698 11585576 ~ 11593545 (+)
XLOC_009739 si:dkey-11o1.7 coding downstream 13508 11597386 ~ 11598447 (+)
XLOC_009740 si:dkey-11o1.3 coding downstream 19218 11603096 ~ 11621551 (+)
XLOC_009741 cxcr3.1 coding downstream 40078 11623956 ~ 11642009 (+)
XLOC_009742 si:dkey-250k15.9 coding downstream 68713 11652591 ~ 11653478 (+)
XLOC_009724 NA non-coding upstream 962966 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 1190865 10387719 ~ 10389787 (+)
XLOC_009718 NA non-coding upstream 1200831 10378331 ~ 10379821 (+)
XLOC_009751 NA non-coding downstream 533753 12117631 ~ 12139336 (+)
XLOC_009755 CR388102.1 non-coding downstream 716291 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 non-coding downstream 796852 12380730 ~ 12380846 (+)
XLOC_009764 NA non-coding downstream 1379082 12962960 ~ 12963877 (+)
XLOC_009765 NA non-coding downstream 1528386 13112264 ~ 13115609 (+)

Expression


Co-expression Network