Gene
RNA
| Item | Value |
|---|---|
| gene id | G222243 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 7111614 ~ 7112897 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU252051 | True | 1136 | lncRNA | 0.41 | 2 | 7111614 | 7112897 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000051_06966165_06969998 | NA | coding | downstream | 141397 | 6966093 ~ 6970217 (-) |
| CI01000051_06958650_06963551 | CLEC11A | coding | downstream | 147793 | 6958572 ~ 6963821 (-) |
| CI01000051_06910132_06916487 | NA | coding | downstream | 195127 | 6909440 ~ 6916487 (-) |
| CI01000051_06884323_06886377 | EXOC8 | coding | downstream | 224975 | 6884008 ~ 6886639 (-) |
| CI01000051_06837978_06881158 | TRIM67 | coding | downstream | 229908 | 6837414 ~ 6881706 (-) |
| CI01000051_07218226_07226180 | CHRNA4B | coding | upstream | 105245 | 7218142 ~ 7226726 (-) |
| CI01000051_07288569_07296096 | ELOVL1B | coding | upstream | 175188 | 7288085 ~ 7296096 (-) |
| CI01000051_07403086_07404051 | NA | coding | upstream | 289170 | 7402067 ~ 7404784 (-) |
| CI01000051_07410144_07439528 | MAST3, MAST3B | coding | upstream | 296566 | 7409463 ~ 7439528 (-) |
| CI01000051_07580256_07582183 | NA | coding | upstream | 467344 | 7580241 ~ 7582183 (-) |
| G222195 | NA | non-coding | downstream | 59937 | 7016959 ~ 7051677 (-) |
| G222194 | NA | non-coding | downstream | 97303 | 7014105 ~ 7014311 (-) |
| G222190 | NA | non-coding | downstream | 100301 | 7011033 ~ 7011313 (-) |
| G222173 | NA | non-coding | downstream | 116618 | 6973082 ~ 6994996 (-) |
| G222137 | NA | non-coding | downstream | 348194 | 6763190 ~ 6763420 (-) |
| G222295 | NA | non-coding | upstream | 49156 | 7162053 ~ 7172871 (-) |
| G222353 | NA | non-coding | upstream | 181410 | 7294307 ~ 7295633 (-) |
| G222355 | NA | non-coding | upstream | 219401 | 7332298 ~ 7332515 (-) |
| G222356 | NA | non-coding | upstream | 229211 | 7342108 ~ 7342528 (-) |
| G222361 | NA | non-coding | upstream | 243206 | 7356103 ~ 7356312 (-) |
| G221840 | NA | other | downstream | 978035 | 6132773 ~ 6133579 (-) |
| G221575 | NA | other | downstream | 1592790 | 5513952 ~ 5518824 (-) |
| G220041 | NA | other | downstream | 2953511 | 4155730 ~ 4158103 (-) |
| CI01000051_02955633_02960400 | SCRN2 | other | downstream | 4150120 | 2955380 ~ 2961148 (-) |
| G218861 | NA | other | downstream | 4270982 | 2840270 ~ 2840632 (-) |
| G222729 | NA | other | upstream | 1229252 | 8342149 ~ 8342652 (-) |
| G222730 | NA | other | upstream | 1230073 | 8342970 ~ 8343438 (-) |
