G221316


Basic Information

Item Value
gene id G221316
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7284987 ~ 7285294 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU251036
AAACATTCACTGATGCTCCAAAAAAAAAAACATGATGCATTAATAGATGGGGGGTGAAAACATTTGGAATTTGAAGAGCAAGGTAAATTGTATTTAATTTGTCTTTCGGGAAACATGCAAGTATTTTCTGTTGCGTCCGAAGGGCAGTACTAAATGAAAGAAAATGATATTCAAGCAAAATAAGAAAAATTTGGACCTCTTCATCCTGTTCAAAAGTTTTCACCCCCCGACTCTTAATGCATCGTGTTTCCTTCTGAAGCATCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCCTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU251036 True 308 lncRNA 0.35 1 7284987 7285294

Neighbor

gene id symbol gene type direction distance location
CI01000051_07267084_07283654 ZFYVE9B coding upstream 972 7267011 ~ 7284015 (+)
CI01000051_07259968_07261598 BT3L4, BTF3L4 coding upstream 23256 7259718 ~ 7261731 (+)
CI01000051_07253002_07255432 PTGFR coding upstream 29367 7252201 ~ 7255620 (+)
CI01000051_07215332_07217167 NA coding upstream 67279 7215332 ~ 7217708 (+)
CI01000051_07170752_07194524 NA coding upstream 90463 7170752 ~ 7194524 (+)
CI01000051_07287140_07287867 NA coding downstream 1846 7287140 ~ 7288035 (+)
CI01000051_07337005_07340657 MOB3C, MOB3C.S, MOBKL2C coding downstream 51559 7336853 ~ 7340692 (+)
CI01000051_07345863_07353841 MKNK1 coding downstream 60569 7345863 ~ 7355120 (+)
CI01000051_07367270_07370738 ATP5B coding downstream 81558 7366852 ~ 7370878 (+)
CI01000051_07378590_07389158 ABCB11B, ABCB11 coding downstream 93296 7378590 ~ 7389570 (+)
G221360 NA non-coding upstream 36489 7248170 ~ 7248498 (+)
G221353 NA non-coding upstream 59820 7224890 ~ 7225167 (+)
G221351 NA non-coding upstream 62000 7222717 ~ 7222987 (+)
G221283 NA non-coding upstream 77414 7207371 ~ 7207573 (+)
G221365 NA non-coding downstream 202 7285496 ~ 7285769 (+)
G221347 NA non-coding downstream 1093 7286387 ~ 7286655 (+)
G221311 NA non-coding downstream 6945 7292239 ~ 7293753 (+)
G221378 NA non-coding downstream 46363 7331657 ~ 7331868 (+)
G221385 NA non-coding downstream 88089 7373383 ~ 7373734 (+)
CI01000051_06825895_06830637 NA other upstream 451919 6825895 ~ 6830637 (+)
G219803 NA other upstream 2232954 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 2909657 4372658 ~ 4393677 (+)
G218981 NA other upstream 4038114 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 5218904 2060534 ~ 2062355 (+)
G221319 NA other downstream 56747 7342041 ~ 7342546 (+)
G221386 NA other downstream 124229 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 820349 8209722 ~ 8214696 (+)
G222727 NA other downstream 1057648 8342942 ~ 8343448 (+)

Expression


Co-expression Network