G221365


Basic Information

Item Value
gene id G221365
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7285496 ~ 7285769 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU251085
AGGTAACCACACACAGTATTAAGAATCAATGGTTCACAAACTTTTGAACTGGGTCATTTTAATAAATACAGCTATTTTTTTTTTTTGTCTTATGGATTATATGTAAACATCTTTTATGTAAAATATCTTACTCAGGACAGTACTAAATAAAAAATAACATGCATTTTGTATGATCTCTCTTATTCTGTTAAAATTTTGCACATTTTCACAGATTCTGCAAGTGGTTCACATACTTTTTCTTGCAACTGTATCTCATGCAGTCTTCATATCTCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU251085 True 274 lncRNA 0.29 1 7285496 7285769

Neighbor

gene id symbol gene type direction distance location
CI01000051_07267084_07283654 ZFYVE9B coding upstream 1481 7267011 ~ 7284015 (+)
CI01000051_07259968_07261598 BT3L4, BTF3L4 coding upstream 23765 7259718 ~ 7261731 (+)
CI01000051_07253002_07255432 PTGFR coding upstream 29876 7252201 ~ 7255620 (+)
CI01000051_07215332_07217167 NA coding upstream 67788 7215332 ~ 7217708 (+)
CI01000051_07170752_07194524 NA coding upstream 90972 7170752 ~ 7194524 (+)
CI01000051_07287140_07287867 NA coding downstream 1371 7287140 ~ 7288035 (+)
CI01000051_07337005_07340657 MOB3C, MOB3C.S, MOBKL2C coding downstream 51084 7336853 ~ 7340692 (+)
CI01000051_07345863_07353841 MKNK1 coding downstream 60094 7345863 ~ 7355120 (+)
CI01000051_07367270_07370738 ATP5B coding downstream 81083 7366852 ~ 7370878 (+)
CI01000051_07378590_07389158 ABCB11B, ABCB11 coding downstream 92821 7378590 ~ 7389570 (+)
G221316 NA non-coding upstream 202 7284987 ~ 7285294 (+)
G221360 NA non-coding upstream 36998 7248170 ~ 7248498 (+)
G221353 NA non-coding upstream 60329 7224890 ~ 7225167 (+)
G221351 NA non-coding upstream 62509 7222717 ~ 7222987 (+)
G221347 NA non-coding downstream 618 7286387 ~ 7286655 (+)
G221311 NA non-coding downstream 6470 7292239 ~ 7293753 (+)
G221378 NA non-coding downstream 45888 7331657 ~ 7331868 (+)
G221385 NA non-coding downstream 87614 7373383 ~ 7373734 (+)
G221393 NA non-coding downstream 90204 7375973 ~ 7376205 (+)
CI01000051_06825895_06830637 NA other upstream 452428 6825895 ~ 6830637 (+)
G219803 NA other upstream 2233463 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 2910166 4372658 ~ 4393677 (+)
G218981 NA other upstream 4038623 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 5219413 2060534 ~ 2062355 (+)
G221319 NA other downstream 56272 7342041 ~ 7342546 (+)
G221386 NA other downstream 123754 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 819874 8209722 ~ 8214696 (+)
G222727 NA other downstream 1057173 8342942 ~ 8343448 (+)

Expression


Co-expression Network