XLOC_009740 (si:dkey-11o1.3)


Basic Information

Item Value
gene id XLOC_009740
gene name si:dkey-11o1.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11603096 ~ 11621551 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019493
GACAGATGAGAGCTCGACCATGATGGCTTCTAATAGTTTATACTGGATTCTGTGGATGGTGACATGTTTTGGAGAGTATTTAGGCCAAGATCTACAGTTTCCTGGGCAGACTTATGGGGCAATAGGAGGAAGTGTGATGTTCACCCCTGAAAACTTAGGATCCATAGGGATTGATGTACAAATTACATGGAATTTTGGAGCAACTAATATACTGACAGGAAAACCAGAATCACCCACAATAGTCCCAGCATACGTAGACAGGGTCAGTTTTGACCAAAACACTCTCTCTCTGGAGCTCAGGAATCTAAAAATGGAGGATTCTGGATCATACATACTGACTGTGACTCCTGTTAGTGGAGATCAACTCAGAGGAGAAACTACACTACAGCTGTTTGAAAACATAACAAATGTGAGGCTTACTGGTCCAGAAGAAACCTTAATCGAGGATGAATCATTTGCCAACATCACCTCTGAGGGAAGCGGCACCATCACCTCTGTGCAGTGGATGAAAGATAACAGTCCTCTGTCTTCTAGCAGCAGAATCATCTTCTCATCTGATAACAGATCAGTGTCCATTAGTCCAGTGGAGAGATCAGATACTGGAGAATATCAGTGTACATACAGTAACCCTGTTAGCTCTGAAACGGCAAAACTCACCCTGATCATCAACTATGGGCCAGAAGGTGTTTCTATTAAGGGTCCAGATGAGATGGATTTAGGGGTTCAAGtgtttttgtcttgctttgcAAATTCTGAACCTTCTGCTTCATTCAGCTGGACGCTTAATGGGTCAGACACTGGTGTGACCACAGACAAATACACCATTGATAAGACTGACTTCACAGACAGTGGAGAATACATCTGTACAGCCTATAATAGAGTCACAAACAGAAGTGAATCAATAGGACATGTTTTACGCATTCAAGTTGGAGGTGGAGGGCTGTCAACCGGAGCGGTAGTTGGCATTGCCATTGGTGTTTCAGTGGCAGTTTCAGGATTTTGTGGTCTGATTGTctattttacaaaaaacaacatAATTCCAAAACCAAACTGTCTGAAAAGGGATGAAGCAAGTGGAGCCACAGCACAAAGAGGACAGGAGCTTgaTATAAGCTTTGAAGAAACTAATAATTTCCCGGATACTAATGGAGATGGAAACCATATATATGAAAATCGGAATGAAATCTATGAAAACGCTCCAAACAGGCCCTCCTGCTCAACGGCTCCCCCACTTCAGGCGAGGAAGTGAAAACATGAACAGCTACTGCATTGAATACTCCTGCAGATTACATGTTCACACAGATGTTTCTTTAATTCATACAGTACATTGTtggtattaaatgtttatttgtgtgtctTTACcataaaacatgtcaaaataataatataagaataGTTTCTTTattcaaatattaattaaagtTTATTGTGATTAACAGATAAGttgaatgaaattaaaatgtaactttttaacCTGAA

Function

symbol description
si:dkey-11o1.3 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093279

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019493 True 1479 mRNA 0.40 9 11603096 11621551

Neighbor

gene id symbol gene type direction distance location
XLOC_009739 si:dkey-11o1.7 coding upstream 4649 11597386 ~ 11598447 (+)
XLOC_009738 si:dkey-11o1.6 coding upstream 9551 11585576 ~ 11593545 (+)
XLOC_009737 NA coding upstream 19218 11580652 ~ 11583878 (+)
XLOC_009736 NA coding upstream 24689 11573189 ~ 11578407 (+)
XLOC_009735 zgc:198329 coding upstream 33367 11558868 ~ 11569729 (+)
XLOC_009741 cxcr3.1 coding downstream 2405 11623956 ~ 11642009 (+)
XLOC_009742 si:dkey-250k15.9 coding downstream 31040 11652591 ~ 11653478 (+)
XLOC_009743 si:dkey-250k15.10 coding downstream 39288 11660839 ~ 11680970 (+)
XLOC_009744 si:dkey-250k15.7 coding downstream 61997 11683548 ~ 11709759 (+)
XLOC_009745 ceacam1 coding downstream 102679 11724230 ~ 11760596 (+)
XLOC_009733 NA non-coding upstream 226251 11361760 ~ 11376845 (+)
XLOC_009724 NA non-coding upstream 985410 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 1213309 10387719 ~ 10389787 (+)
XLOC_009751 NA non-coding downstream 496080 12117631 ~ 12139336 (+)
XLOC_009755 CR388102.1 non-coding downstream 678618 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 non-coding downstream 759179 12380730 ~ 12380846 (+)
XLOC_009764 NA non-coding downstream 1341409 12962960 ~ 12963877 (+)
XLOC_009765 NA non-coding downstream 1490713 13112264 ~ 13115609 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_04826146_04828890 NA coding CI01000016 null 4826088 ~ 4829158 (+)