G221386


Basic Information

Item Value
gene id G221386
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7401175 ~ 7413007 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU251106
TAGACAAGGGAACAACTGTTTGTATACATTTATAGACCGAAAACTAATCATTGTCAATCATTCTTATTGTTTGAATCTCGTTTTCTTGATTTACCGTGAGTGCCATAGAGTAATGTTATGACATTATTTTCAACACACTCAAATGTATCTAATATGATAAAGAGCGTTGTGTTACCCCACATATGCTTGACCGGAAGAAGCGGAAGAGGTGACTGCGGCATAATAAAAGTTCCACTGCTTTAGAGCCGTGTGTCGCGCTCGTTTCCCATTAGCAATCACTCCAGCAGCCTTGTTGCACTCCCACAACACTCGGCCCTGCTCTGCTTCATACTACAGTAATGTTAATAATTTCATCCATGAACATGATTTCTGCCCGTGTCCCATCCCGATTCTTTTCCACCGGCTGTGAGGTGAAGACGACATCTCCCATGAACCCGCACTCAATCTCGGCGTCTTCAAGCTATGCCTTTGTTTTGAATAGGTGGCCTCTAGCGGCGAAAAACGACATAGTGTGCCTTTAATTTGATGCCTTGCAATAATGCTATCTTCAAACCATCATGCTAAAACAGTTTGACTGTTTGGGGTGGAGATCGTTGTAACAGTCATTAAAAATGCTAAATTGTGTAAGCTAGCAAAATTTTGTTGTGATGTTTGCTTAAAGCAGCATAGTACGAGCCAGTGTAGTATATAAATGTTCTTGACAGTTCACAGTTCACTATTCACAGTCAAGAATTAAGGGAAGGAAGCCTCATGAAAGATATACTTTAATGTGTCGTTTTACAATTAATGTACAATATTAATATAATAGGTTAATAGCACATTAATAATTATAATACAACAACACTAAGATACTGGTATCAGCTTATTTATTTATTATTCGGTAAGCTGTTTCATTAAAGTCCCCTTGTAGTCAATCATTTTATCCTTTAAAACTCATCTTTGATCACCAAAATTACATATTTAAACGTTTTTTTCCTGTGAAAAAAATGTACTAGCAATCTTCAAGTTTTTACTTTTTGGCCAACAGCACGTTTCCAGTGTACATTATAAATAAAAAAGCATAAATATTCCCTGCATAAGAATAGCTTACTTCCATTTACACACTAATACTCCACTAACTGTAATTGTTTGAACTGCGTGGCAACAAACATCTCAGTGGGTGCGGCGAGAAGCCCGTGGGGATGATGACGTGCTGTAACAGTCCTTCACTCATTTATCTCTCTTTCAACTTGCTTTTTTCTGGACTCTGATGCTTATCTGGCTTTTCTGCATCTGCAGTTGTCCCTCCAACTTCATGCGTAGCTGCTGAGGAGCGTGGGACATCTTTGGCTGCACAGTCAGCCAGATGTTCAGCTTGACTCGGAGTATGTGACAAGTTTTCCTCAGCCTCTTCCTCGTCCTCATCTGAACAAAGCCTCCAATCATCTGCTTCCTCGCTCTCCGATCCTTGCACGGCGATTTGGGGGACCAGCGGATTCCTCCTTGCCATGCACTCTTCCTCCGACTGCGTTTCGCCCATCATCTGCTTGGGCCACACGCCAGCGGACGTGGCCGACTGAGCGGGAATCTGGGGAGCCCTCTCATCCGGTTCGTCAAAGCTCACTTCCTGAACGGCTTCCTGCTTCTTGAAAGAATCTCGCCGTTCTGAGAGATTCAGCTTGCGCATTACAACGATCTGTTCCATACGGTCACCTGGCCAGTCCCTCAATCTCTGGGAACACAAGTACCCGCCCAGCCTGCCATGATCCGTCGAATATGTTGCACCACAGGCCACCTCTACCTCGGTGTCCCCCAGTATATCCACCTCGCAGTGGGGGACTTCCAACGTGTGTCTGCGGGGCGCGTGGGGCTTTTTGTCAGCAAATAAGGCCCCTGAGAGTTTCTCCGCAGACTGGACTCTCTTCAGCAGAGGGGAACGTGGAGGTTCTGCACTCCGTGGTCTGACCACATGCCGAATGATAGTAGGAGGTGAGAGGGTCTTGCCGTGAAAGGAGTGGAGGGTTTTGGAGATGCTGGGTAAGGGGGAGGGGGAACGCTGGGGGGATAGGGCCTGTGGCGAGGAGGTGCAGGCCAGAGGCGATGGTGGGATACTGCTGGTGGACTTCCGTCTCCCCACTTTAGTGTACCGTTGGTTGCTAAGTTTAGACCCAAGGCCATGCAGAGAGCTGGGCCGCATCTGGACCGCCGGTGAACTGGGAGAGCTGGAGCATGGAGAGGCGTTC
>TU251107
GGTTGGAGTTAAAAATCATCATTTGTGTTCTACTGTAGAAACAAAGTCACCTACATCTTGGATGCCCTGGGGTCAGGTCATACCAGTGGTGTGGTCGGGAACGGGGCTCCGGCAGGGTGTTGTGGGTCCGGAGGAAAGGCTGTGGGTGGGAGAGCCTGGCAGACTCTCGCTGGAGGACACAGAGTGATGCAGGCCGGAGGAGAAACTGCGGCTGCTGTGCATGACGGTGCTCTGTTTGGACAGCTTTTTCAGCATGCTGCGCCTCCTGGGTAAACACGAGAGATTATTCAGGTTAACGGCAAACATCCATGAATGATCAACTCTTCGACGGGCCATTTTTCCTTTACAGCTGCTCTTGCGTGCCGGCCCAATCTTTATAGACGTGTCCTCCAGCGCAATAGTCTGCAGGGCCACCT
>TU251108
TGTAAAACTGATCTATTTGGTTTGATGCTTAAAATAAACAAATTATATTGTTTTTTGACACCTTGACCAACATGTAACTACATTTCAAGTTACTTGTGGGGTTCCCACAGTTGAAGCCCAAATGGTCGACACAAACAGTCCTTTTTTCTTTCGCATGGATCATTTCAAACACTCTGGAAACCCTTTGAGATTGTGGAATAATACATGAAAAGGGCCACATGACAATTCCATTCAAATATCATTTGAACTTGCAGCTTTTAAAATCACACACAATGTCGCTGCAAAAATGAAAAGCTCTTGGAGGATGAAATGGATTCGAAGCTTTTGCACATTTTCATAGAAAAATCAAGTCATTCAAATCCCCTCTTCAACCCGTTCACAGAAGGTGAAAAAAATGTACTAGCAATCTTCAAGTTTTTACTTTTTGGCCAACAGCACGTTTCCAGTGTACATTATAAATAAAAAAGCATAAATATTCCCTGCATAAGAATAGCTTACTTCCATTTACACACTAATACTCCACTAACTGTAATTGTTTGAACTGCGTGGCAACAAACATCTCAGTGGGTGCGGCGAGAAGCCCGTGGGGATGATGACGTGCTGTAACAGTCCTTCACTCATTTATCTCTCTTTCAACTTGCTTTTTTCTGGACTCTGATGCTTATCTGGCTTTTCTGCATCTGCAGTTGTCCCTCCAACTTCATGCGTAGCTGCTGAGGAGCGTGGGACATCTTTGGCTGCACAGTCAGCCAGATGTTCAGCTTGACTCGGAGTATGTGACAAGTTTTCCTCAGCCTCTTCCTCGTCCTCATCTGAACAAAGCCTCCAATCATCTGCTTCCTCGCTCTCCGATCCTTGCACGGCGATTTGGGGGACCAGCGGATTCCTCCTTGCCATGCACTCTTCCTCCGACTGCGTTTCGCCCATCATCTGCTTGGGCCACACGCCAGCGGACGTGGCCGACTGAGCGGGAATCTGGGGAGCCCTCTCATCCGGTTCGTCAAAGCTCACTTCCTGAACGGCTTCCTGCTTCTTGAAAGAATCTCGCCGTTCTGAGAGATTCAGCTTGCGCATTACAACGATCTGTTCCATACGGTCACCTGGCCAGTCCCTCAATCTCTGGGAACACAAGTACCCGCCCAGCCTGCCATGATCCGTCGAATATGTTGCACCACAGGCCACCTCTACCTCGGTGTCCCCCAGTATATCCACCTCGCAGTGGGGGACTTCCAACGTGTGTCTGCGGGGCGCGTGGGGCTTTTTGTCAGCAAATAAGGCCCCTGAGAGTTTCTCCGCAGACTGGACTCTCTTCAGCAGAGGGGAACGTGGAGGTTCTGCACTCCGTGGTCTGACCACATGCCGAATGATAGTAGGAGGTCATACCAGTGGTGTGGTCGGGAACGGGGCTCCGGCAGGGTGTTGTGGGTCCGGAGGAAAGGCTGTGGGTGGGAGAGCCTGGCAGACTCTCGCTGGAGGACACAGAGTGATGCAGGCCGGAGGAGAAACTGCGGCTGCTGTGCATGACGGTGCTCTGTTTGGACAGCTTTTTCAGCATGCTGCGCCTCCGGTCCTGACTGTCCTTCCATTTGCTCCTCTTACAGCGACGGGCCATTTTTCCTTTACAGCTGCTCTTGCGTGCCGGCCCAATCTTTATAGACGTGTCCTCCAGCGCAATAGTCTGCAGGGCCACCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU251106 False 2222 lncRNA 0.46 3 7401175 7411152
TU251107 False 416 lncRNA 0.54 3 7409162 7413007
TU251108 True 1692 TUCP 0.49 3 7409523 7413007

Neighbor

gene id symbol gene type direction distance location
CI01000051_07391277_07399712 ABCB11B, ABCB11 coding upstream 1389 7390634 ~ 7399786 (+)
CI01000051_07378590_07389158 ABCB11B, ABCB11 coding upstream 11605 7378590 ~ 7389570 (+)
CI01000051_07367270_07370738 ATP5B coding upstream 30297 7366852 ~ 7370878 (+)
CI01000051_07345863_07353841 MKNK1 coding upstream 46055 7345863 ~ 7355120 (+)
CI01000051_07337005_07340657 MOB3C, MOB3C.S, MOBKL2C coding upstream 60483 7336853 ~ 7340692 (+)
CI01000051_07470914_07489207 LRP1AB, LRP1 coding downstream 57907 7470914 ~ 7489242 (+)
CI01000051_07507549_07530087 HOMER3 coding downstream 94542 7507549 ~ 7530087 (+)
CI01000051_07534938_07540104 NA coding downstream 119632 7532639 ~ 7540418 (+)
CI01000051_07542167_07549737 ARRDC2 coding downstream 129160 7542167 ~ 7550660 (+)
CI01000051_07611022_07612093 NA coding downstream 197442 7610449 ~ 7612093 (+)
G221393 NA non-coding upstream 24970 7375973 ~ 7376205 (+)
G221385 NA non-coding upstream 27441 7373383 ~ 7373734 (+)
G221378 NA non-coding upstream 69307 7331657 ~ 7331868 (+)
G221311 NA non-coding upstream 107422 7292239 ~ 7293753 (+)
G221347 NA non-coding upstream 114520 7286387 ~ 7286655 (+)
G221336 NA non-coding downstream 9916 7422923 ~ 7425419 (+)
G221406 NA non-coding downstream 37472 7450479 ~ 7450890 (+)
G221408 NA non-coding downstream 38733 7451740 ~ 7452011 (+)
G221409 NA non-coding downstream 42324 7455331 ~ 7455537 (+)
G221333 NA non-coding downstream 391344 7804351 ~ 7840774 (+)
G221319 NA other upstream 58629 7342041 ~ 7342546 (+)
CI01000051_06825895_06830637 NA other upstream 568107 6825895 ~ 6830637 (+)
G219803 NA other upstream 2349142 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 3025845 4372658 ~ 4393677 (+)
G218981 NA other upstream 4154302 3245443 ~ 3246873 (+)
CI01000051_08211233_08214513 NA other downstream 692636 8209722 ~ 8214696 (+)
G222727 NA other downstream 929935 8342942 ~ 8343448 (+)

Expression


Co-expression Network