Gene
RNA
| Item | Value |
|---|---|
| gene id | G222379 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 7459102 ~ 7461790 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU252218 | False | 560 | lncRNA | 0.41 | 4 | 7459102 | 7461790 |
| TU252217 | True | 799 | lncRNA | 0.29 | 2 | 7460039 | 7461654 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000051_07410144_07439528 | MAST3, MAST3B | coding | downstream | 19574 | 7409463 ~ 7439528 (-) |
| CI01000051_07403086_07404051 | NA | coding | downstream | 54318 | 7402067 ~ 7404784 (-) |
| CI01000051_07288569_07296096 | ELOVL1B | coding | downstream | 163006 | 7288085 ~ 7296096 (-) |
| CI01000051_07218226_07226180 | CHRNA4B | coding | downstream | 232376 | 7218142 ~ 7226726 (-) |
| CI01000051_06966165_06969998 | NA | coding | downstream | 488885 | 6966093 ~ 6970217 (-) |
| CI01000051_07580256_07582183 | NA | coding | upstream | 118451 | 7580241 ~ 7582183 (-) |
| CI01000051_07584669_07585335 | NA | coding | upstream | 122565 | 7584355 ~ 7585335 (-) |
| CI01000051_07618053_07621854 | NA | coding | upstream | 156252 | 7618042 ~ 7621854 (-) |
| CI01000051_07836858_07853522 | TMEM259 | coding | upstream | 375035 | 7836825 ~ 7854111 (-) |
| CI01000051_08087374_08111384 | NA | coding | upstream | 625148 | 8086938 ~ 8111595 (-) |
| G222378 | NA | non-coding | downstream | 659 | 7458242 ~ 7458443 (-) |
| G222370 | NA | non-coding | downstream | 83112 | 7375718 ~ 7375990 (-) |
| G222262 | NA | non-coding | downstream | 88102 | 7366892 ~ 7371000 (-) |
| G222363 | NA | non-coding | downstream | 101717 | 7357149 ~ 7357385 (-) |
| G222361 | NA | non-coding | downstream | 102790 | 7356103 ~ 7356312 (-) |
| G222386 | NA | non-coding | upstream | 5641 | 7467431 ~ 7785815 (-) |
| G222383 | NA | non-coding | upstream | 6769 | 7468559 ~ 7506222 (-) |
| G222287 | NA | non-coding | upstream | 328588 | 7790378 ~ 7844010 (-) |
| G222289 | NA | non-coding | upstream | 357812 | 7819602 ~ 7867243 (-) |
| G222502 | NA | non-coding | upstream | 418850 | 7880640 ~ 7880840 (-) |
| G221840 | NA | other | downstream | 1325523 | 6132773 ~ 6133579 (-) |
| G221575 | NA | other | downstream | 1940278 | 5513952 ~ 5518824 (-) |
| G220041 | NA | other | downstream | 3300999 | 4155730 ~ 4158103 (-) |
| CI01000051_02955633_02960400 | SCRN2 | other | downstream | 4497608 | 2955380 ~ 2961148 (-) |
| G218861 | NA | other | downstream | 4618470 | 2840270 ~ 2840632 (-) |
| G222729 | NA | other | upstream | 880359 | 8342149 ~ 8342652 (-) |
| G222730 | NA | other | upstream | 881180 | 8342970 ~ 8343438 (-) |
